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Commits on Sep 20, 2022

• Adding RNA-Seq Expression results for AML and GBM cases

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• WGS CNV and SV results for GBM and AML cases

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Commits on Sep 19, 2022

• Uploading AML and GBM Somatic Variant (Tin Daisy) results

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Commits on Sep 8, 2022

• Catalog v2 and v3 updates based on discovery 9/7/22

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Commits on Aug 23, 2022

• Download of 2 miRNA-Seq harmonized BAMs

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Commits on Aug 19, 2022

• Download of 7 PDA WXS as requested by Rita

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• Upload of batch 20220819.Rita16

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Commits on Aug 13, 2022

• Adding BamMap3 files and scripts for converting v2 BamMaps to v3

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Commits on Aug 12, 2022

• Discovery run 8/11/22, yielding old-style (v2) catalog

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Commits on Aug 11, 2022

• Discovery run 8/10/22, and removal of stopped cases from catalog

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• Import of WXS data to MGI for germline calling

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  Matthew Wyczalkowski

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Commits on Aug 10, 2022

• Import of batch 20220808.AML_GBM, with WGS, RNA-Seq, WXS data

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• Removing stopped cases from cases list

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Commits on Aug 9, 2022

• Upload of batch 20220808.AML_GBM to katmai

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Commits on Jul 29, 2022

• Removing 312 RNA-Seq datafiles (2657.63Gb)

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• Merge branch 'master' of https://github.com/ding-lab/CPTAC3.catalog

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• Removing 3680 WGS and RNA-Seq data, 286806 Gb

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Commits on Jul 1, 2022

• Updating with discovery 6/30/22

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Commits on Jun 16, 2022

• Bugfixes and minor updates to Catalog3 dataset names

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• Updated CPTAC3 discovery 6/15/22, catalog3 format

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Commits on Jun 14, 2022

• Partial bugfix to CPTAC3 Catalog3 file

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Commits on Jun 9, 2022

• Download of batch 20220606.GBM_329 to storage1

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Commits on Jun 7, 2022

• Adding Catalog3 file from discovery run 6/6/22

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Commits on Jun 3, 2022

• Adding Y3 results

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• Catalog update 6/2/22

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Commits on May 18, 2022

• Merge branch 'master' of https://github.com/ding-lab/CPTAC3.catalog

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• Adding results of catalog discovery 20220517

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Commits on May 17, 2022

• Adding AML Somatic Wrapper WXS somatic variant calling results

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Commits on Apr 27, 2022

• Deleting hg19 GBM data which Clara downloaded

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Commits on Apr 20, 2022

• Updating processed case counts

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Commits on Apr 19, 2022

• Adding AML miRNA-Seq analysis

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• Adding CPTAC3 AML Somatic CNV cases

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• Adding AML WXS Germline batch

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  Matthew Wyczalkowski

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• Adding RNA-Seq Transcript analysis of AML batch

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Commits on Apr 18, 2022

• Adding results of discovery 20220415

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