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Download of 7 PDA WXS as requested by Rita
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* Initial plan: TOTAL: .189085 Tb in 8 files
* One file (CPT0198630002.WholeExome.RP-1303.bam) not downloaded because of a LEGAL REASONS error
* Work dir: /home/m.wyczalkowski/Projects/CPTAC3/import/20220819b.Rita8
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mwyczalkowski committed Aug 19, 2022
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7 changes: 7 additions & 0 deletions BamMap/storage1.BamMap.dat
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Expand Up @@ -1435,6 +1435,7 @@ C3L-01031.RNA-Seq.R1.T C3L-01031 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/
C3L-01031.RNA-Seq.R2.T C3L-01031 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/91301da0-ce18-46c8-af66-e47970a76390/180508_UNC31-K00269_0127_AHTV7YBBXX_GTGGCC_S56_L007_R2_001.fastq.gz 4413825785 FASTQ NA 91301da0-ce18-46c8-af66-e47970a76390 storage1
C3L-01032.RNA-Seq.R1.T C3L-01032 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7a970896-a786-4466-8b48-f0fc47eb3573/190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R1_001.fastq.gz 4897431197 FASTQ NA 7a970896-a786-4466-8b48-f0fc47eb3573 storage1
C3L-01032.RNA-Seq.R2.T C3L-01032 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/178f804a-0edc-4761-9125-5104b06a2443/190115_UNC31-K00269_0179_BH357YBBXY_ACAGTG_S3_L001_R2_001.fastq.gz 5416472857 FASTQ NA 178f804a-0edc-4761-9125-5104b06a2443 storage1
C3L-01032.WXS.N C3L-01032 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f5110f3-ee1b-4870-846a-e4a07daaf8c7/CPT0167270002.WholeExome.RP-1303.bam 29254406550 BAM hg19 6f5110f3-ee1b-4870-846a-e4a07daaf8c7 storage1
C3L-01032.WXS.N.hg38 C3L-01032 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/985e5e24-550a-4d9e-967b-108945601415/39fbddfe-218a-4a59-865e-4e4d45f136f7_wxs_gdc_realn.bam 39785289287 BAM hg38 985e5e24-550a-4d9e-967b-108945601415 storage1
C3L-01032.WXS.T C3L-01032 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4758f275-76bd-41b2-b57e-361d3f2006ce/CPT0170510022.WholeExome.RP-1303.bam 60768919984 BAM hg19 4758f275-76bd-41b2-b57e-361d3f2006ce storage1
C3L-01033.RNA-Seq.R1.T C3L-01033 CCRCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e38b3802-04bf-4acb-a507-5398bd0c38d6/190123_UNC31-K00269_0183_BH3L7LBBXY_GTTTCG_S12_L003_R1_001.fastq.gz 2451910737 FASTQ NA e38b3802-04bf-4acb-a507-5398bd0c38d6 storage1
Expand Down Expand Up @@ -1521,10 +1522,12 @@ C3L-01157.RNA-Seq.R1.T C3L-01157 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/
C3L-01157.RNA-Seq.R2.T C3L-01157 GBM RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f9a967f9-6406-40e3-8843-662f83c5f38d/181207_UNC32-K00270_0136_AH2N7LBBXY_ATGTCA_S10_L003_R2_001.fastq.gz 2884065208 FASTQ NA f9a967f9-6406-40e3-8843-662f83c5f38d storage1
C3L-01158.RNA-Seq.R1.T C3L-01158 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ece270eb-efc7-440c-9a45-8c8000ba796c/190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R1_001.fastq.gz 4754861470 FASTQ NA ece270eb-efc7-440c-9a45-8c8000ba796c storage1
C3L-01158.RNA-Seq.R2.T C3L-01158 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/cc148b01-aa6a-40cf-ac6c-75d6bbedd59b/190115_UNC31-K00269_0179_BH357YBBXY_ATCACG_S7_L002_R2_001.fastq.gz 4535272581 FASTQ NA cc148b01-aa6a-40cf-ac6c-75d6bbedd59b storage1
C3L-01158.WXS.N C3L-01158 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/c989a5e9-3ec9-4d76-9896-665db392d8fd/CPT0171560002.WholeExome.RP-1303.bam 27117657273 BAM hg19 c989a5e9-3ec9-4d76-9896-665db392d8fd storage1
C3L-01158.WXS.N.hg38 C3L-01158 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/65ade05f-b8cc-4d7d-b501-cd91d08e5885/81ae0d3c-0a91-4f41-9d28-b0c866abac8e_wxs_gdc_realn.bam 36792322242 BAM hg38 65ade05f-b8cc-4d7d-b501-cd91d08e5885 storage1
C3L-01158.WXS.T C3L-01158 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/88698e11-6693-4808-9a68-754b4bade5d4/CPT0171630022.WholeExome.RP-1303.bam 58476666614 BAM hg19 88698e11-6693-4808-9a68-754b4bade5d4 storage1
C3L-01160.RNA-Seq.R1.T C3L-01160 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/f65ed51b-3ffb-4d6d-8b3b-4cc508e8e68b/190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R1_001.fastq.gz 4360439785 FASTQ NA f65ed51b-3ffb-4d6d-8b3b-4cc508e8e68b storage1
C3L-01160.RNA-Seq.R2.T C3L-01160 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/20a9db35-056d-43aa-b71d-dea448930ef0/190115_UNC31-K00269_0179_BH357YBBXY_CGATGT_S6_L002_R2_001.fastq.gz 4741609485 FASTQ NA 20a9db35-056d-43aa-b71d-dea448930ef0 storage1
C3L-01160.WXS.N C3L-01160 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/afa7c130-3731-41ca-a718-fbdf0600a69a/CPT0167290002.WholeExome.RP-1303.bam 24421148529 BAM hg19 afa7c130-3731-41ca-a718-fbdf0600a69a storage1
C3L-01160.WXS.N.hg38 C3L-01160 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/3cde2ea0-7e8b-4f0d-afc2-c0cb05a56245/07384100-195f-4071-a266-1ba880b66180_wxs_gdc_realn.bam 33237579668 BAM hg38 3cde2ea0-7e8b-4f0d-afc2-c0cb05a56245 storage1
C3L-01160.WXS.T C3L-01160 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4f64a688-7914-4871-97f8-40c38bc3bfc0/CPT0170600020.WholeExome.RP-1303.bam 47421435720 BAM hg19 4f64a688-7914-4871-97f8-40c38bc3bfc0 storage1
C3L-01182.RNA-Seq.genomic.Tpb.hg38 C3L-01182 AML RNA-Seq tumor_peripheral_blood /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/4689e2e4-10aa-472a-b7b0-897370f61311/2eb024f9-b975-4320-a593-154e1dd1b4ea.rna_seq.genomic.gdc_realn.bam 5572543578 BAM hg38 4689e2e4-10aa-472a-b7b0-897370f61311 storage1
Expand Down Expand Up @@ -5926,6 +5929,7 @@ C3N-01893.RNA-Seq.R2.A C3N-01893 LSCC RNA-Seq tissue_normal /storage1/fs1/dingla
C3N-01893.RNA-Seq.R2.T C3N-01893 LSCC RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/943fbee4-66f9-42ab-9a74-e81edb1d5fb1/180925_UNC32-K00270_0122_BHWNF7BBXX_CTTGTA_S28_L007_R2_001.fastq.gz 4192059117 FASTQ NA 943fbee4-66f9-42ab-9a74-e81edb1d5fb1 storage1
C3N-01897.RNA-Seq.R1.T C3N-01897 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/393c145c-4d08-45f0-bd45-efd44aa457d4/190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R1_001.fastq.gz 3621322188 FASTQ NA 393c145c-4d08-45f0-bd45-efd44aa457d4 storage1
C3N-01897.RNA-Seq.R2.T C3N-01897 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ec5a4c86-6c49-41a3-b04a-4983b4862110/190115_UNC31-K00269_0179_BH357YBBXY_TTAGGC_S5_L002_R2_001.fastq.gz 3895274347 FASTQ NA ec5a4c86-6c49-41a3-b04a-4983b4862110 storage1
C3N-01897.WXS.N C3N-01897 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/e40ea4d3-8d13-42a4-8b2e-e774765273b7/CPT0162360002.WholeExome.RP-1303.bam 21906030833 BAM hg19 e40ea4d3-8d13-42a4-8b2e-e774765273b7 storage1
C3N-01897.WXS.N.hg38 C3N-01897 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/9eacaf4b-96a4-4053-b3cb-c725c77a347b/3bb8fcc8-1937-48f1-adf3-9431e7ea7f24_wxs_gdc_realn.bam 30186380588 BAM hg38 9eacaf4b-96a4-4053-b3cb-c725c77a347b storage1
C3N-01897.WXS.T C3N-01897 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a8f404b2-3e0b-481b-b81b-2cc0d68e8296/CPT0162300021.WholeExome.RP-1303.bam 37517675995 BAM hg19 a8f404b2-3e0b-481b-b81b-2cc0d68e8296 storage1
C3N-01898.RNA-Seq.R1.A C3N-01898 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8ff8e21d-54cc-491e-a2e8-c7e5e50f0a08/220114_UNC32-K00270_0310_AHMWT5BBXY_GGACTTGG-CGCAGACG_S3_L004_R1_001.fastq.gz 3603292349 FASTQ NA 8ff8e21d-54cc-491e-a2e8-c7e5e50f0a08 storage1
Expand Down Expand Up @@ -6510,8 +6514,10 @@ C3N-02589.RNA-Seq.R2.A C3N-02589 PDA RNA-Seq tissue_normal /storage1/fs1/dinglab
C3N-02589.RNA-Seq.R2.T C3N-02589 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a5c04d86-8a09-471f-8956-11e6c0c3df8c/190621_UNC32-K00270_0185_BH7G72BBXY_ACACTAAG-ATCCATAT_S18_L005_R2_001.fastq.gz 4545951139 FASTQ NA a5c04d86-8a09-471f-8956-11e6c0c3df8c storage1
C3N-02590.RNA-Seq.R1.T C3N-02590 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/84d73b44-bbb1-4a25-99d4-b8f1b74f571c/190115_UNC31-K00269_0179_BH357YBBXY_GCCAAT_S2_L001_R1_001.fastq.gz 3131688108 FASTQ NA 84d73b44-bbb1-4a25-99d4-b8f1b74f571c storage1
C3N-02590.RNA-Seq.R2.T C3N-02590 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/83fd17f6-28eb-46d2-81b0-2ef839a1a9fd/190115_UNC31-K00269_0179_BH357YBBXY_GCCAAT_S2_L001_R2_001.fastq.gz 3483715687 FASTQ NA 83fd17f6-28eb-46d2-81b0-2ef839a1a9fd storage1
C3N-02590.WXS.N C3N-02590 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/39604754-f3a4-46a6-901c-1b2d667ad74a/CPT0187630002.WholeExome.RP-1303.bam 30121240731 BAM hg19 39604754-f3a4-46a6-901c-1b2d667ad74a storage1
C3N-02590.WXS.N.hg38 C3N-02590 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/a0da46e0-ff1f-4434-997e-68947453421b/ade0461b-bf5a-4f6c-8fee-09d43580e9c8_wxs_gdc_realn.bam 41090038552 BAM hg38 a0da46e0-ff1f-4434-997e-68947453421b storage1
C3N-02590.WXS.T C3N-02590 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/7580b76c-0327-414e-99bd-e99392202b66/CPT0187590022.WholeExome.RP-1303.bam 36033454513 BAM hg19 7580b76c-0327-414e-99bd-e99392202b66 storage1
C3N-02591.WXS.N C3N-02591 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/6f0f0dc2-b00d-4440-ba17-47c28396d9eb/CPT0162750002.WholeExome.RP-1303.bam 25610717920 BAM hg19 6f0f0dc2-b00d-4440-ba17-47c28396d9eb storage1
C3N-02591.WXS.N.hg38 C3N-02591 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/2ac0e90d-c37c-4044-aa66-74caed82b248/4968424c-2b02-4d69-92ca-6216433228ac_wxs_gdc_realn.bam 35122427782 BAM hg38 2ac0e90d-c37c-4044-aa66-74caed82b248 storage1
C3N-02591.WXS.T C3N-02591 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/42d07bfb-e1e3-4936-95d1-aba0e3c26895/CPT0162710030.WholeExome.RP-1303.bam 27939284227 BAM hg19 42d07bfb-e1e3-4936-95d1-aba0e3c26895 storage1
C3N-02592.RNA-Seq.R1.T C3N-02592 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ebbfc55a-b377-42df-b70d-5afd5caf59c3/190614_UNC32-K00270_0182_BH7777BBXY_AGCCTCAT-AGTAGAGA_S20_L005_R1_001.fastq.gz 4240838662 FASTQ NA ebbfc55a-b377-42df-b70d-5afd5caf59c3 storage1
Expand Down Expand Up @@ -6865,6 +6871,7 @@ C3N-02996.WXS.T.BIOTEXT_YEyWzRW.hg38 C3N-02996 PDA WXS tumor /storage1/fs1/m.wyc
C3N-02996.WXS.T.BIOTEXT_Z6zYAR8.hg38 C3N-02996 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/ed5bb7bd-bedf-4585-9849-16526aae512a/6b70063e-2445-4fd2-80d4-7bf0a9d80047_wxs_gdc_realn.bam 51355263780 BAM hg38 ed5bb7bd-bedf-4585-9849-16526aae512a storage1
C3N-02997.RNA-Seq.R1.T C3N-02997 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d7462092-1df0-412e-b272-60f9e0c9799a/190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R1_001.fastq.gz 3834475097 FASTQ NA d7462092-1df0-412e-b272-60f9e0c9799a storage1
C3N-02997.RNA-Seq.R2.T C3N-02997 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/b150cdea-b5b2-4335-a26b-8e94a257c0ca/190115_UNC31-K00269_0179_BH357YBBXY_TGACCA_S8_L002_R2_001.fastq.gz 4051846905 FASTQ NA b150cdea-b5b2-4335-a26b-8e94a257c0ca storage1
C3N-02997.WXS.N C3N-02997 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/1252179f-34e9-4028-bead-bd41a38300b5/CPT0187920002.WholeExome.RP-1303.bam 24446342493 BAM hg19 1252179f-34e9-4028-bead-bd41a38300b5 storage1
C3N-02997.WXS.N.hg38 C3N-02997 PDA WXS blood_normal /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/d85499af-013d-4afd-9be4-263b92a2f996/ec85c30a-c8b0-4610-944a-85e223670cd6_wxs_gdc_realn.bam 33307097960 BAM hg38 d85499af-013d-4afd-9be4-263b92a2f996 storage1
C3N-02997.WXS.T C3N-02997 PDA WXS tumor /storage1/fs1/m.wyczalkowski/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/8648eac7-7167-49e3-bf28-c2c01f697f50/CPT0187880025.WholeExome.RP-1303.bam 52630614915 BAM hg19 8648eac7-7167-49e3-bf28-c2c01f697f50 storage1
C3N-02998.RNA-Seq.R1.T C3N-02998 PDA RNA-Seq tumor /storage1/fs1/dinglab/Active/Primary/CPTAC3.share/CPTAC3-GDC/GDC_import/data/bb3f5976-cf4d-48ff-9c8d-114bce4f2979/190621_UNC32-K00270_0185_BH7G72BBXY_AGTACTCC-AACCTGTT_S12_L003_R1_001.fastq.gz 3810750341 FASTQ NA bb3f5976-cf4d-48ff-9c8d-114bce4f2979 storage1
Expand Down

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