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Updating with discovery 6/30/22
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* Work dir: /home/mwyczalk_test/Projects/CPTAC3/discover/discover.20220629
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@mwyczalkowski
mwyczalkowski committed Jul 1, 2022
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Showing 2 changed files with 31 additions and 12 deletions.
24 changes: 12 additions & 12 deletions CPTAC3.Catalog.Summary.dat
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Expand Up @@ -400,7 +400,7 @@ C3L-00997 HNSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TTTT AA miR
C3L-00999 HNSCC WGS.hg19 T N WXS.hg19 T N A RNA.fq TTTT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTTTTT AAA miRNA.hg38 T A MethArray TT AA
C3L-01000 LSCC WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA
C3L-01031 PDA WGS.hg19 T N A WXS.hg19 TT N A RNA.fq TT miRNA.fq T WGS.hg38 T N A WXS.hg38 TT N A RNA.hg38 TTT miRNA.hg38 T MethArray TT AA
C3L-01032 PDA WGS.hg19 T N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3L-01032 PDA WGS.hg19 T N WXS.hg19 TTT N A RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3L-01033 CCRCC WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT miRNA.fq T WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT miRNA.hg38 T MethArray TT AA
C3L-01034 CCRCC WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT miRNA.fq T WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT miRNA.hg38 T MethArray TT AA
C3L-01035 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
Expand Down Expand Up @@ -449,8 +449,8 @@ C3L-01154 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T
C3L-01155 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3L-01156 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3L-01157 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3L-01158 PDA WGS.hg19 TT N WXS.hg19 TT N A RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N A RNA.hg38 TTT miRNA.hg38 T MethArray TTTT AA
C3L-01160 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TTTT
C3L-01158 PDA WGS.hg19 TT N WXS.hg19 TTT N AA RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N A RNA.hg38 TTT miRNA.hg38 T MethArray TTTT AA
C3L-01160 PDA WGS.hg19 TT N WXS.hg19 TTT N A RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TTTT
C3L-01181 AML WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-01182 AML WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-01187 AML WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
Expand Down Expand Up @@ -1294,7 +1294,7 @@ C3L-03597 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq
C3L-03621 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-03622 PDA WGS.hg19 WXS.hg19 TT N RNA.fq TT miRNA.fq WGS.hg38 WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 MethArray
C3L-03623 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-03624 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq miRNA.fq WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 miRNA.hg38 MethArray TTTT
C3L-03624 PDA WGS.hg19 TT N WXS.hg19 TTT N RNA.fq miRNA.fq WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 miRNA.hg38 MethArray TTTT
C3L-03625 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-03626 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-03627 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
Expand Down Expand Up @@ -2310,7 +2310,7 @@ C3L-06894 PRAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq
C3L-06895 PRAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-06897 PRAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-06901 PRAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-06912 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-06912 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray TT
C3L-06914 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-06915 THCA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-06917 THCA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
Expand Down Expand Up @@ -2419,7 +2419,7 @@ C3L-07205 THCA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq
C3L-07206 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-07207 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-07210 STAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-07212 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-07212 LGG WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray TT
C3L-07213 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3L-07214 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3L-07215 THCA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
Expand Down Expand Up @@ -2975,7 +2975,7 @@ C3N-01195 LUAD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq
C3N-01196 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-01197 GBM WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T AA WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT
C3N-01198 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-01199 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-01199 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray TT
C3N-01200 CCRCC WGS.hg19 TTTTT N A WXS.hg19 TTTTT N A RNA.fq TTTTTTTTTT AA miRNA.fq TTTTT A WGS.hg38 TTTTT N A WXS.hg38 TTTTT N A RNA.hg38 TTTTTTTTTTTTTTT AAA miRNA.hg38 TTTTT A MethArray TTTTTTTTTT AA
C3N-01211 UCEC WGS.hg19 T N WXS.hg19 T N RNA.fq TTTT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTTTTT miRNA.hg38 T MethArray TT
C3N-01212 UCEC WGS.hg19 T N WXS.hg19 T N RNA.fq TTTT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTTTTT miRNA.hg38 T MethArray TT
Expand Down Expand Up @@ -3238,7 +3238,7 @@ C3N-01893 LSCC WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA
C3N-01894 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-01895 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-01896 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-01897 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TTTT
C3N-01897 PDA WGS.hg19 TT N WXS.hg19 TTT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TTTT
C3N-01898 PDA WGS.hg19 WXS.hg19 TTT N RNA.fq TTTT AAAA miRNA.fq WGS.hg38 WXS.hg38 TTT N RNA.hg38 TTTTTT AAAAAA miRNA.hg38 MethArray
C3N-01899 PDA WGS.hg19 WXS.hg19 TTT N RNA.fq TTTTTT AA miRNA.fq WGS.hg38 WXS.hg38 TTT N RNA.hg38 TTTTTTTTT AAA miRNA.hg38 MethArray
C3N-01900 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
Expand Down Expand Up @@ -3516,8 +3516,8 @@ C3N-02586 LUAD WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA
C3N-02587 LUAD WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA
C3N-02588 LUAD WGS.hg19 T N A WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N A WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA
C3N-02589 PDA WGS.hg19 T N WXS.hg19 T N A RNA.fq TT AA miRNA.fq T A WGS.hg38 T N WXS.hg38 T N A RNA.hg38 TTT AAA miRNA.hg38 T A MethArray TT AA
C3N-02590 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-02591 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq miRNA.fq WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 miRNA.hg38 MethArray TTTT
C3N-02590 PDA WGS.hg19 TT N WXS.hg19 TTT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-02591 PDA WGS.hg19 TT N WXS.hg19 TTT N RNA.fq miRNA.fq WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 miRNA.hg38 MethArray TTTT
C3N-02592 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-02593 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-02594 PDA WGS.hg19 WXS.hg19 TT N RNA.fq TT AAAA miRNA.fq WGS.hg38 WXS.hg38 TT N RNA.hg38 TTT AAAAAA miRNA.hg38 MethArray
Expand Down Expand Up @@ -3688,7 +3688,7 @@ C3N-02993 UCEC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq
C3N-02994 UCEC WGS.hg19 T N WXS.hg19 T N RNA.fq TTTT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTTTTT miRNA.hg38 T MethArray TT
C3N-02995 TBD WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-02996 PDA WGS.hg19 WXS.hg19 TTT N RNA.fq TT AAAA miRNA.fq WGS.hg38 WXS.hg38 TTT N RNA.hg38 TTT AAAAAA miRNA.hg38 MethArray
C3N-02997 PDA WGS.hg19 TT N WXS.hg19 TT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-02997 PDA WGS.hg19 TT N WXS.hg19 TTT N RNA.fq TT miRNA.fq T WGS.hg38 TT N WXS.hg38 TT N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-02998 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-02999 PDA WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-03000 PDA WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray
Expand Down Expand Up @@ -3944,7 +3944,7 @@ C3N-03784 HNSCC WGS.hg19 WXS.hg19 RNA.fq miRNA.fq
C3N-03785 HNSCC WGS.hg19 T N WXS.hg19 T N RNA.fq TTTT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTTTTT miRNA.hg38 T MethArray TT
C3N-03786 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-03787 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-03788 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-03788 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq T WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray TT
C3N-03789 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
C3N-03790 GBM WGS.hg19 WXS.hg19 RNA.fq miRNA.fq WGS.hg38 WXS.hg38 RNA.hg38 miRNA.hg38 MethArray
C3N-03791 GBM WGS.hg19 T N WXS.hg19 T N RNA.fq TT miRNA.fq T WGS.hg38 T N WXS.hg38 T N RNA.hg38 TTT miRNA.hg38 T MethArray TT
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