Download of 2 miRNA-Seq harmonized BAMs

* Work dir: /home/mwyczalk_test/Projects/CPTAC3/import.Y3/20220823.miRNA-Seq-2 * .000608609 Tb in 2 files
AdamDanielHarris · Aug 23, 2022 · 2d89e76 · 2d89e76
1 parent 31f6763
commit 2d89e76
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/BamMap/katmai.BamMap.dat b/BamMap/katmai.BamMap.dat
@@ -4204,6 +4204,7 @@ C3L-05888.MethArray.Green.Tbm	C3L-05888	AML	Methylation Array	tumor_bone_marrow
 C3L-05888.MethArray.Red.Tbm	C3L-05888	AML	Methylation Array	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/c5dcb4df-4818-4a13-9820-a4e03d5eb965/205555390118_R08C01_Red.idat	13677955	IDAT	NA	c5dcb4df-4818-4a13-9820-a4e03d5eb965	katmai
 C3L-05888.miRNA-Seq.Tbm	C3L-05888	AML	miRNA-Seq	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/7ae09ad9-91b7-4dca-96bb-73a58d23a637/210817_UNC31-K00269_0302_AHLCTHBBXY_CGATGT_S27_L003_R1_001.unaln.bam	47475062	BAM	NA	7ae09ad9-91b7-4dca-96bb-73a58d23a637	katmai
 C3L-05888.miRNA-Seq.Tbm	C3L-05888	AML	miRNA-Seq	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/a9f21010-4951-4bcd-a908-3fa8d3372c06/210331_UNC31-K00269_0297_AHKCFKBBXY_CGATGT_S21_L007_R1_001.unaln.bam	107475845	BAM	NA	a9f21010-4951-4bcd-a908-3fa8d3372c06	katmai
+C3L-05888.miRNA-Seq.Tbm.hg38	C3L-05888	AML	miRNA-Seq	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/5b9cb0d5-33f9-4e82-bbbc-54262cf588db/9f6aa56e-d054-4626-ab28-d613470fb235_mirnaseq_gdc_realn.bam	176929130	BAM	hg38	5b9cb0d5-33f9-4e82-bbbc-54262cf588db	katmai
 C3L-05888.RNA-Seq.R1.Tbm	C3L-05888	AML	RNA-Seq	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/7cdc741d-0a64-4e81-938a-cc4297d7cc3d/210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R1_001.fastq.gz	4554756978	FASTQ	NA	7cdc741d-0a64-4e81-938a-cc4297d7cc3d	katmai
 C3L-05888.RNA-Seq.R2.Tbm	C3L-05888	AML	RNA-Seq	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/0b44d08b-a40e-42d2-a682-ace4760bc581/210331_UNC32-K00270_0278_AHL3YTBBXY_TTATAACC-GATATCGA_S12_L003_R2_001.fastq.gz	4720793096	FASTQ	NA	0b44d08b-a40e-42d2-a682-ace4760bc581	katmai
 C3L-05889.MethArray.Green.Tbm	C3L-05889	AML	Methylation Array	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/e3e36f13-811f-43e2-9902-1c2fc7694830/205555380155_R05C01_Grn.idat	13677955	IDAT	NA	e3e36f13-811f-43e2-9902-1c2fc7694830	katmai
@@ -4370,6 +4371,7 @@ C3L-06369.MethArray.Green.Tbm	C3L-06369	AML	Methylation Array	tumor_bone_marrow
 C3L-06369.MethArray.Red.Tbm	C3L-06369	AML	Methylation Array	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/e073afad-a137-4894-bf4a-f9479cb63425/204930640111_R06C01_Red.idat	13677960	IDAT	NA	e073afad-a137-4894-bf4a-f9479cb63425	katmai
 C3L-06369.miRNA-Seq.Tbm	C3L-06369	AML	miRNA-Seq	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/2dff295d-0f3c-43e7-a8fb-7754dd89cdeb/210817_UNC31-K00269_0302_AHLCTHBBXY_CAGGCG_S8_L003_R1_001.unaln.bam	178546103	BAM	NA	2dff295d-0f3c-43e7-a8fb-7754dd89cdeb	katmai
 C3L-06369.miRNA-Seq.Tbm	C3L-06369	AML	miRNA-Seq	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/35fe6185-a3ca-4b08-8bef-bc1cd2c9e803/210702_UNC32-K00270_0289_AHKJ22BBXY_CAGGCG_S30_L005_R1_001.unaln.bam	256246836	BAM	NA	35fe6185-a3ca-4b08-8bef-bc1cd2c9e803	katmai
+C3L-06369.miRNA-Seq.Tbm.hg38	C3L-06369	AML	miRNA-Seq	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/4e5e0167-0700-4c1a-a059-07939f66453b/2de7aa7a-fec0-4fb2-a267-e21d1c07f937_mirnaseq_gdc_realn.bam	492243280	BAM	hg38	4e5e0167-0700-4c1a-a059-07939f66453b	katmai
 C3L-06369.RNA-Seq.R1.Tbm	C3L-06369	AML	RNA-Seq	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/8912632e-66df-420c-9db6-8a5138fffedd/210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R1_001.fastq.gz	3884976741	FASTQ	NA	8912632e-66df-420c-9db6-8a5138fffedd	katmai
 C3L-06369.RNA-Seq.R2.Tbm	C3L-06369	AML	RNA-Seq	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/0d4ca071-c2ec-480b-ac31-4f78236b2d52/210708_UNC32-K00270_0290_BHLLHHBBXY_CTAGCGCT-GTGTAGAC_S2_L001_R2_001.fastq.gz	4137092013	FASTQ	NA	0d4ca071-c2ec-480b-ac31-4f78236b2d52	katmai
 C3L-06374.MethArray.Green.Tbm	C3L-06374	AML	Methylation Array	tumor_bone_marrow	/diskmnt/Projects/cptac/GDC_import/data/a9fc2d6b-5f31-4ea5-9d1c-3f2874bf414b/205555380130_R07C01_Grn.idat	13677955	IDAT	NA	a9fc2d6b-5f31-4ea5-9d1c-3f2874bf414b	katmai