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Pull requests: neherlab/treetime

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Pull requests list

test: add failing repro for non-monotone skyline segment boundaries
#872 opened Jul 24, 2026 by ivan-aksamentov Member • Draft
1 of 2 tasks
test: add failing repro for skyline solver reporting non-convergence as success
#871 opened Jul 24, 2026 by ivan-aksamentov Member • Draft
1 of 2 tasks
test: add failing repro for unvalidated non-positive skyline stiffness
#870 opened Jul 24, 2026 by ivan-aksamentov Member • Draft
1 of 2 tasks
Refactor/unified coalescent
#869 opened Jul 23, 2026 by rneher Member Loading…
1
docs: correct skyline quadrature self-consistency claim
#868 opened Jul 23, 2026 by ivan-aksamentov Member • Draft
1 of 2 tasks
1
docs: correct skyline penalty analogy in decision record
#867 opened Jul 23, 2026 by ivan-aksamentov Member • Draft
1 task done
fix: make dropped coalescent prior explicit
#866 opened Jul 23, 2026 by ivan-aksamentov Member • Draft
1 task done
fix: reject over-segmented skyline grids
#865 opened Jul 23, 2026 by ivan-aksamentov Member • Draft
3 of 4 tasks
1
fix: harden skyline solver inputs and convergence
#864 opened Jul 23, 2026 by ivan-aksamentov Member • Draft
4 tasks done
1
fix: allow --coalescent to seed --coalescent-opt
#863 opened Jul 23, 2026 by ivan-aksamentov Member • Draft
1 task done
1
fix: fit coalescent prior on final node times
#862 opened Jul 23, 2026 by ivan-aksamentov Member • Draft
4 of 5 tasks
1
docs: correct coalescent-opt and skyline CLI help
#861 opened Jul 23, 2026 by ivan-aksamentov Member • Draft
2 tasks done
1
Feat/gauss model
#310 opened Jan 3, 2025 by rneher Member • Draft
Add python_requires>=3.7 to setup.py
#237 opened May 7, 2023 by corneliusroemer Member Loading…
Feature: Extend ARG functionality to MultiTreeKnit
#219 opened Dec 19, 2022 by rneher Member Loading…
1
New upper bound for inter1d objects
#205 opened Aug 29, 2022 by anna-parker Contributor Loading…
1
3
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