build(sweeps): align CI, precommit, and make format, remove python 3.9 support

.circleci/config.yml

@@ -5,27 +5,6 @@ orbs:
   codecov: codecov/codecov@5.0.3
 
 jobs:
-  linux39:
-    machine:
-      image: ubuntu-2204:2024.11.1
-    steps:
-      - checkout
-      - run:
-          name: Install python
-          command: pyenv install 3.9
-      - run:
-          name: Load python
-          command: pyenv global 3.9
-      - run:
-          name: Run tests
-          command: pip install tox==3.24.0 && tox -e py39
-          no_output_timeout: 60m
-      - codecov/upload
-      - store_artifacts:
-          path: prof/
-      - store_test_results:
-          path: .
-    resource_class: large
   linux310:
     machine:
       image: ubuntu-2204:2024.11.1
@@ -89,19 +68,6 @@ jobs:
       - store_test_results:
           path: .
     resource_class: large
-  linters39:
-    docker:
-      - image: cimg/python:3.9
-    steps:
-      - checkout
-      - run:
-          name: Install dependencies
-          command: pip install -r requirements.dev.txt
-      - run:
-          name: Run linters
-          command: |
-            pre-commit run --all-files
-            mypy --ignore-missing-imports --scripts-are-modules .
   linters310:
     docker:
       - image: cimg/python:3.10
@@ -114,7 +80,6 @@ jobs:
           name: Run linters
           command: |
             pre-commit run --all-files
-            mypy --ignore-missing-imports --scripts-are-modules .
   linters311:
     docker:
       - image: cimg/python:3.11
@@ -127,7 +92,6 @@ jobs:
           name: Run linters
           command: |
             pre-commit run --all-files
-            mypy --ignore-missing-imports --scripts-are-modules .
   linters312:
     docker:
       - image: cimg/python:3.12
@@ -140,16 +104,13 @@ jobs:
           name: Run linters
           command: |
             pre-commit run --all-files
-            mypy --ignore-missing-imports --scripts-are-modules .
 
 workflows:
   main:
     jobs:
-      - linux39
       - linux310
       - linux311
       - linux312
-      - linters39
       - linters310
       - linters311
       - linters312

.pre-commit-config.yaml

@@ -12,8 +12,16 @@ repos:
       - id: black
         pass_filenames: true
   - repo: https://github.com/pycqa/flake8
-    rev: 5.0.4
+    rev: 7.3.0
     hooks:
       - id: flake8
         pass_filenames: true
+  - repo: https://github.com/pre-commit/mirrors-mypy
+    rev: v1.14.1
+    hooks:
+      - id: mypy
+        args: ["--ignore-missing-imports", "--scripts-are-modules", "."]
+        additional_dependencies: ["types-PyYAML==5.4.3"]
+        pass_filenames: false
+        always_run: true
 exclude: setup.cfg

Makefile

@@ -1,7 +1,3 @@
-lint:
-	pre-commit run --all-files
-	mypy --scripts-are-modules --ignore-missing-imports .
-
 dist: clean ## builds source and wheel package
 	python setup.py sdist bdist_wheel
 	ls -l dist
@@ -30,16 +26,16 @@ clean-pyc: ## remove Python file artifacts
 	find . -name '__pycache__' -exec rm -fr {} +
 
 test:
-	tox -e "black,flake8,py39"
+	tox -e "black,flake8,py310"
 
 test-full:
 	tox
 
 test-short:
-	tox -e "py39"
+	tox -e "py310"
 
 format:
-	tox -e format
+	pre-commit run --all-files
 
 release: dist ## package and upload release
 	pip install -qq twine

README.md

@@ -172,7 +172,7 @@ pip install -r requirements.dev.txt
 Install the pre-commit hooks:
 
 ```
-pre-commit install .
+pre-commit install
 ```
 
 Run formatting and tests:

requirements.dev.txt

@@ -1,7 +1,7 @@
 -r requirements.txt
-pre-commit==2.12.0
-black==22.3.0
-flake8==3.9.1
+pre-commit==4.6.0
+black==22.8.0
+flake8==7.3.0
 types-PyYAML==5.4.3
 mypy==1.14.1
 tox>=3.24.0

setup.py

@@ -21,19 +21,17 @@
     install_requires=requirements,
     license="MIT license",
     zip_safe=False,
-    python_requires=">=3.6",
+    python_requires=">=3.10",
     classifiers=[
         "Development Status :: 5 - Production/Stable",
         "Intended Audience :: Developers",
         "Intended Audience :: Science/Research",
         "License :: OSI Approved :: MIT License",
         "Natural Language :: English",
         "Programming Language :: Python :: 3",
-        "Programming Language :: Python :: 3.6",
-        "Programming Language :: Python :: 3.7",
-        "Programming Language :: Python :: 3.8",
-        "Programming Language :: Python :: 3.9",
         "Programming Language :: Python :: 3.10",
+        "Programming Language :: Python :: 3.11",
+        "Programming Language :: Python :: 3.12",
         "Topic :: Scientific/Engineering :: Artificial Intelligence",
         "Topic :: Software Development :: Libraries :: Python Modules",
     ],

tox.ini

@@ -1,8 +1,8 @@
 [tox]
 minversion=3.24.0
-envlist = py{39,310,311,312}
+envlist = py{310,311,312}
 
-[testenv:py{39,310,311,312}]
+[testenv:py{310,311,312}]
 deps =
     -r{toxinidir}/requirements.test.txt
 
@@ -14,7 +14,7 @@ commands =
 
 [black]
 deps=
-    black==22.3.0
+    black==22.8.0
 
 [testenv:black]
 basepython = python3
@@ -23,24 +23,18 @@ deps = {[black]deps}
 commands =
     black --check src/ tests/ tools/ examples/
 
-[isort]
-profile = black
-multi_line_output = 3
-
 [testenv:format]
 basepython = python3
 skip_install = true
 deps=
-    {[black]deps}
-    isort==4.3.21
+    pre-commit==4.6.0
 commands =
-    isort --recursive src/ tests/ tools/ examples/
-    black src/ tests/ tools/ examples/
+    pre-commit run --all-files
 
 [flake8]
 max-line-length = 80
 select = C,E,F,W,B,B950
-ignore = E501, W503
+ignore = E501, E721, W503
 deps =
     flake8
     flake8-colors