Code

Distance indexing#206

Code

Merged

xchang1 merged 21 commits intomastervgteam/libbdsg:masterfrom distance-indexingvgteam/libbdsg:distance-indexingCopy head branch name to clipboardDec 6, 2024

+324-133

Commits

Commits on Nov 21, 2024

• Throw an error when trying to access distances in a distanceless index

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Commits on Nov 23, 2024

• Add default values for temporary distances

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• Check for a distanceless simple snarl

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Commits on Nov 26, 2024

• Make distanceless trivial snarls not include node lengths

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Commits on Nov 27, 2024

• Make different distance and distanceless trivial snarls

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• Fix number of entries in a distanceless trivial snarl record

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• Add unused option to only store distances along the top-level chain

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• Use option to not store nested distances

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• Check if a chain is nested based on the parent instead of tree_depth, which never got set

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• Take out tree_depth from temporary index because it never gets used

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Commits on Dec 3, 2024

• Estimate size of index better

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• Merge remote-tracking branch 'origin/master' into distance-indexing

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• Update bindings

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Commits on Dec 4, 2024

• Maybe make the bindings properly this time

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Commits on Dec 6, 2024

• Revert "Maybe make the bindings properly this time"

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• Revert "Update bindings"

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• Put back unused ints because it changed the python bindings and I couldn't rebuild them

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• Leave a note to remove unused ints

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• Reorder things in structs

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• Merge int vectors in temporary chain index

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• Revert "Merge int vectors in temporary chain index"

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