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Commits on Dec 18, 2024

• Take out unused function

  xchang1

  committedDec 18, 2024
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Commits on Dec 17, 2024

• Merge pull request #207 from vgteam/document-distance-indexing

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  xchang1

  authoredDec 17, 2024
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Commits on Dec 11, 2024

• Add some comments and instructions for making a new snarl index

  xchang1

  committedDec 11, 2024
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Commits on Dec 6, 2024

• Merge pull request #206 from vgteam/distance-indexing

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  xchang1

  authoredDec 6, 2024
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• Revert "Merge int vectors in temporary chain index"

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  xchang1

  committedDec 6, 2024
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• Merge int vectors in temporary chain index

  xchang1

  committedDec 6, 2024
  84a80f4

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• Reorder things in structs

  xchang1

  committedDec 6, 2024
  6cff676

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• Leave a note to remove unused ints

  xchang1

  committedDec 6, 2024
  2bf0f6a

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• Put back unused ints because it changed the python bindings and I couldn't rebuild them

  xchang1

  committedDec 6, 2024
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• Revert "Update bindings"

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  xchang1

  committedDec 6, 2024
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• Revert "Maybe make the bindings properly this time"

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  xchang1

  committedDec 6, 2024
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Commits on Dec 4, 2024

• Maybe make the bindings properly this time

  xchang1

  committedDec 4, 2024
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Commits on Dec 3, 2024

• Update bindings

  xchang1

  committedDec 3, 2024
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• Merge remote-tracking branch 'origin/master' into distance-indexing

  xchang1

  committedDec 3, 2024
  4b61a7c

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• Estimate size of index better

  xchang1

  committedDec 3, 2024
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Commits on Nov 27, 2024

• Take out tree_depth from temporary index because it never gets used

  xchang1

  committedNov 27, 2024
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• Check if a chain is nested based on the parent instead of tree_depth, which never got set

  xchang1

  committedNov 27, 2024
  35a0476

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• Use option to not store nested distances

  xchang1

  committedNov 27, 2024
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• Add unused option to only store distances along the top-level chain

  xchang1

  committedNov 27, 2024
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• Fix number of entries in a distanceless trivial snarl record

  xchang1

  committedNov 27, 2024
  0ef534b

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• Make different distance and distanceless trivial snarls

  xchang1

  committedNov 27, 2024
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Commits on Nov 26, 2024

• Make distanceless trivial snarls not include node lengths

  xchang1

  committedNov 26, 2024
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Commits on Nov 23, 2024

• Check for a distanceless simple snarl

  xchang1

  committedNov 23, 2024
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• Add default values for temporary distances

  xchang1

  committedNov 23, 2024
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Commits on Nov 21, 2024

• Throw an error when trying to access distances in a distanceless index

  xchang1

  committedNov 21, 2024
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Commits on Sep 19, 2024

• Merge pull request #204 from vgteam/distance-bugfix

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  xchang1

  authoredSep 19, 2024
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Commits on Sep 12, 2024

• Get chain distance properly

  xchang1

  committedSep 12, 2024
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• Don't try to add lengths for a distanceless index

  xchang1

  committedSep 12, 2024
  33e2fc2

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Commits on Sep 11, 2024

• Fix bug looping in a chain without a snarl

  xchang1

  committedSep 11, 2024
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Commits on Mar 7, 2024

• Merge pull request #195 from vgteam/zip-clustering

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  xchang1

  authoredMar 7, 2024
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Commits on Feb 16, 2024

• Merge remote-tracking branch 'origin/zip-clustering' into HEAD

  xchang1

  committedFeb 16, 2024
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• Make max_prefix_sum accessible

  xchang1

  committedFeb 16, 2024
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Commits on Aug 31, 2023

• Fix is_loopin_chain to consider trivial chains

  xchang1

  committedAug 31, 2023
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Commits on Jul 24, 2023

• Fix bug finding distances in a root snarl

  xchang1

  committedJul 24, 2023
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Commits on Jul 1, 2023

• Find snarls by rank by going through snarls, so that the ranks can be sorted

  xchang1

  committedJul 1, 2023
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