applyFileSystemEdits called from a REPL now operates directly on disk

[rodinaarssen]

applyFileSystemEdits called from a REPL now operates directly on disk instead of through LSP.

Closes usethesource/rascal-language-servers#844

[codecov]

Codecov Report

❌ Patch coverage is 0% with 39 lines in your changes missing coverage. Please review.
✅ Project coverage is 47%. Comparing base (6cfa756) to head (69e2b97).
⚠️ Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
...org/rascalmpl/library/util/IDEServicesLibrary.java	0%	39 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##              main   #2495   +/-   ##
=======================================
- Coverage       47%     47%   -1%     
+ Complexity    6626    6621    -5     
=======================================
  Files          783     783           
  Lines        64703   64741   +38     
  Branches      9688    9691    +3     
=======================================
- Hits         30724   30711   -13     
- Misses       31580   31628   +48     
- Partials      2399    2402    +3     

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[DavyLandman]

Yes, this is nice and compact, but has some issues with surrogate pairs (and closing of streams in all cases)