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Dependency Issue With Scipy

Status: Open.

#29 In snehamitra/SCARlink;

· AndrewLutsky opened on Feb 12, 2026

Request for fragments.tsv file used in the paper’s sample dataset

Status: Open.

#28 In snehamitra/SCARlink;

· BIsnake2001 opened on Dec 18, 2025

Troubleshooting x and y dimension error

Status: Open.

#27 In snehamitra/SCARlink;

· gprahalad opened on Nov 5, 2025

KeyError: 'norm_factor_scatac' when using Figshare data with latest Docker image

Status: Open.

#26 In snehamitra/SCARlink;

· allenphant opened on Oct 22, 2025

jValues missing from arrow files

Status: Open.

#22 In snehamitra/SCARlink;

· AleksandraNenova opened on Mar 10, 2025

Support for scanpy and snapatac2

Status: Open.

#19 In snehamitra/SCARlink;

· caofan opened on Oct 4, 2024

Problem running scarlink_processing on pbmc test data

Status: Open.

#13 In snehamitra/SCARlink;

· JaBa90 opened on Jul 12, 2024

Models aren't attempted for >90% of genes?

Status: Open.

#12 In snehamitra/SCARlink;

· danieljrichard opened on Jul 1, 2024

Integrated datasets?

Status: Open.

#11 In snehamitra/SCARlink;

· danieljrichard opened on Jun 28, 2024

Reproducing the results of fig3

Status: Open.

#9 In snehamitra/SCARlink;

· fanyue322 opened on May 23, 2024

poisson model for normalized values

Status: Open.

#8 In snehamitra/SCARlink;

· BenxiaHu opened on Apr 25, 2024

request for sample data objects

Status: Open.

#6 In snehamitra/SCARlink;

· sid5427 opened on Mar 26, 2024