Search results

Add viral support

enhancementNew feature or requestNew feature or request

Status: Open.

#63 In nf-core/seqsubmit;

· KateSakharova opened on May 7, 2026

co-assemblies support

assembly_submit

enhancementNew feature or requestNew feature or request

Status: Open.

#61 In nf-core/seqsubmit;

· KateSakharova opened on May 6, 2026

Improve --centre_name and --upload_tpa arguments usage

assembly_submit

enhancementNew feature or requestNew feature or request

genome_submit

Status: Open.

#57 In nf-core/seqsubmit;

· ochkalova opened on Apr 29, 2026

Implement chunking

enhancementNew feature or requestNew feature or request

Status: Open.

#55 In nf-core/seqsubmit;

· KateSakharova opened on Apr 24, 2026

Add human contamination removal optional step

enhancementNew feature or requestNew feature or request

Status: Open.

#51 In nf-core/seqsubmit;

· KateSakharova opened on Apr 15, 2026

Push all test data to nf-datasets

enhancementNew feature or requestNew feature or request

Status: Open.

#48 In nf-core/seqsubmit;

· ochkalova opened on Mar 26, 2026

Refactor FASTA validation

assembly_submit

enhancementNew feature or requestNew feature or request

genome_submit

Status: Open.

#47 In nf-core/seqsubmit;

· ochkalova opened on Mar 26, 2026

Add eukaryotic MAGs/bins support

enhancementNew feature or requestNew feature or request

eukaryotes

Status: Open.

#40 In nf-core/seqsubmit;

· KateSakharova opened on Mar 19, 2026

Accept assembly submissions for raw-reads not submitted to ENA

assembly_submit

enhancementNew feature or requestNew feature or request

Status: Open.

#29 In nf-core/seqsubmit;

· KateSakharova opened on Feb 19, 2026

Add a subworkflow to upload raw reads to ENA

enhancementNew feature or requestNew feature or request

read_submit

Status: Open.

#28 In nf-core/seqsubmit;

· mberacochea opened on Feb 12, 2026

Write a nf-core/mag samplesheet generator for nf-core/seqsubmit

enhancementNew feature or requestNew feature or request

Status: Open.

Enhancement

#6 In nf-core/seqsubmit;

· KateSakharova opened on Oct 24, 2025

Write nf-test for ena-webin-cli

enhancementNew feature or requestNew feature or request

Status: Open.

Task

#5 In nf-core/seqsubmit;

· KateSakharova opened on Oct 24, 2025