co-assemblies support

[KateSakharova]

Description of feature

assembly-uploader supports co-assemblies. We need to modify assemblysubmit schema to recieve a list of runs

[ochkalova]

Approximate list of changes to make this possible (hardest case: no coverage, no umbrella sample)

• Modify schemas assets/schema_input_genome.json and assets/schema_input_assembly.json

ASSEMBLYSUBMIT:

• Modify meta construction from samplesheet
• Make sure COVERM_CONTIG can accept multiple reads
• Modify average coverage calculation (file format will change)
• Update CREATE_ASSEMBLY_METADATA_CSV
• Implement umbrella sample generation in assembly_uploader

GENOMESUBMIT:

• Modify meta construction from samplesheet
• Make sure COVERM_GENOME can accept multiple reads
• Modify average coverage calculation (file format will change)
• Update CREATE_GENOME_METADATA_TSV
• Make sure genome-uploader can use umbrella samples