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Fix wfmash exclude delim #169

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e11b3de
update samtools faidx moduels
subwaystation Jun 21, 2023
89f0b14
bump to 1.1.0dev
subwaystation Aug 1, 2023
48d6a3a
try manual fix of multiqc_config
subwaystation Aug 1, 2023
dfa05a6
Merge branch 'dev' into doi
subwaystation Aug 1, 2023
3cc66d8
Merge pull request #137 from nf-core/doi
subwaystation Aug 1, 2023
5375a6b
update gfaffix, multiqc, samtools/faidx
subwaystation Aug 21, 2023
c28f08d
try to fix samtools/faidx
subwaystation Aug 21, 2023
818f809
Merge pull request #145 from nf-core/update/modules
subwaystation Aug 21, 2023
1651210
vg deconstruct 1.50.1
subwaystation Aug 21, 2023
ffb263e
Merge branch 'dev' into update/modules
subwaystation Aug 21, 2023
3053320
Merge pull request #146 from nf-core/update/modules
subwaystation Aug 21, 2023
63707cb
update smoothxg to v0.7.1
subwaystation Aug 23, 2023
cefbdde
Merge pull request #147 from nf-core/update/modules
subwaystation Aug 23, 2023
d1f0eec
also put DRAW into MultiQC report
subwaystation Aug 23, 2023
c06ddc5
Merge pull request #148 from nf-core/fix/multiqc
subwaystation Aug 23, 2023
f69a7f9
another MultiQC fix
subwaystation Aug 23, 2023
9eafdf3
life is strange
subwaystation Aug 23, 2023
b2cd62d
Merge pull request #149 from nf-core/fix/multiqc
subwaystation Aug 23, 2023
27e851d
Merge branch 'dev' into update_modules
subwaystation Sep 4, 2023
1b545e9
update odgi and wfmash
subwaystation Sep 4, 2023
b70ace7
Merge pull request #150 from nf-core/update_modules
subwaystation Sep 4, 2023
a1f8072
fix wfmash_sparse_map parameter
subwaystation Sep 21, 2023
16bcbcc
add wfmash_sparse_map test
subwaystation Sep 21, 2023
6538720
try linter fix
subwaystation Sep 21, 2023
dc5495a
try fix
subwaystation Sep 21, 2023
2904385
add wfmash_sparse_map to ignored params
subwaystation Sep 21, 2023
2570fd5
revert to string theory
subwaystation Sep 21, 2023
a2a4fe4
remove ignore parameter --wfmash_sparse_map
subwaystation Sep 21, 2023
7575ba1
update tests, add pattern
subwaystation Sep 21, 2023
90ebc5d
update CI, fix linting error
subwaystation Sep 21, 2023
0d66ee3
Merge pull request #152 from nf-core/wfmash_sparse_map
subwaystation Sep 21, 2023
b271144
Template update for nf-core/tools version 2.10
nf-core-bot Sep 25, 2023
0db9b6b
bold commit to dev updating citations
subwaystation Oct 12, 2023
f6aa812
merge conflicts
FriederikeHanssen Oct 12, 2023
5d07ebc
fix modules.json
FriederikeHanssen Oct 12, 2023
ffc2e7b
add missing citation
FriederikeHanssen Oct 12, 2023
9d4675d
more missing citations
FriederikeHanssen Oct 12, 2023
7ff3241
Merge pull request #153 from nf-core/nf-core-template-merge-2.10
subwaystation Oct 13, 2023
8b3b1d4
Add metric endings for larger numbers
Oct 17, 2023
e197934
Add test to ensure metric parameter suffix handling
Oct 17, 2023
1dfbd29
Merge branch 'dev' of github.com:heringerp/pangenome into dev
Oct 17, 2023
b4593b6
Fix parsing of default integers from the config
Oct 17, 2023
dc1c162
Fix variable namings and regex pattern
Oct 17, 2023
49dce5b
Remove unnecessary if
Oct 17, 2023
8362eee
Merge pull request #155 from heringerp/dev
heringerp Oct 17, 2023
e441ca5
make the use of chunks explicit
subwaystation Oct 31, 2023
baf2d76
bug fix
subwaystation Oct 31, 2023
db11552
Merge pull request #160 from nf-core/wfmash_power_up
subwaystation Oct 31, 2023
03af9b1
Template update for nf-core/tools version 2.11
nf-core-bot Dec 19, 2023
49207d8
Template update for nf-core/tools version 2.11.1
nf-core-bot Dec 20, 2023
3f309cc
Template update for nf-core/tools version 2.12
nf-core-bot Jan 29, 2024
f129661
Merge remote-tracking branch 'origin/dev' into nf-core-template-merge…
subwaystation Jan 29, 2024
87abe94
prettier, but not pretty enough
subwaystation Jan 29, 2024
86cdd25
maybe happy
subwaystation Jan 29, 2024
fee6eb0
fix linter
subwaystation Jan 29, 2024
905e176
DE(A)VD container
subwaystation Jan 29, 2024
0191e18
fix most linting errors
subwaystation Jan 29, 2024
564c039
oh be pretty, oh be smart: don't start
subwaystation Jan 29, 2024
79ea215
Merge pull request #163 from nf-core/nf-core-template-merge-2.12
subwaystation Jan 30, 2024
a8f4b2b
update modules
subwaystation Feb 1, 2024
ef49965
revert wfmash to 0.10.5
subwaystation Feb 1, 2024
a78db05
now
subwaystation Feb 1, 2024
8e2eed3
Merge pull request #164 from nf-core/update_modules
subwaystation Feb 1, 2024
c621412
update wfmash, multiqc
subwaystation Feb 7, 2024
59b0113
bug fix
subwaystation Feb 7, 2024
e41a525
another try
subwaystation Feb 7, 2024
c873b10
another wfmash update
subwaystation Feb 8, 2024
e3bd04c
another wfmash update
subwaystation Feb 8, 2024
28e73b1
Put functions within closure to evaluate them properly.
adamrtalbot Feb 8, 2024
1d2915b
Merge pull request #166 from nf-core/config_function_fix
subwaystation Feb 8, 2024
6914080
Merge branch 'dev' into update_modules
subwaystation Feb 8, 2024
c8cad90
Merge pull request #165 from nf-core/update_modules
subwaystation Feb 8, 2024
fe5c1c9
fix delim bug
subwaystation Feb 20, 2024
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oh be pretty, oh be smart: don't start
subwaystation committed Jan 29, 2024
commit 564c039b43ec68668e07f83554cd8212a2ac9042
2 changes: 1 addition & 1 deletion .devcontainer/devcontainer.json
Original file line number Diff line number Diff line change
@@ -18,7 +18,7 @@
"python.linting.flake8Path": "/opt/conda/bin/flake8",
"python.linting.pycodestylePath": "/opt/conda/bin/pycodestyle",
"python.linting.pydocstylePath": "/opt/conda/bin/pydocstyle",
"python.linting.pylintPath": "/opt/conda/bin/pylint",
"python.linting.pylintPath": "/opt/conda/bin/pylint"
},

// Add the IDs of extensions you want installed when the container is created.