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Fix wfmash exclude delim#169

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subwaystation wants to merge 73 commits intomasternf-core/pangenome:masterfrom fix_wfmash_exclude_delimnf-core/pangenome:fix_wfmash_exclude_delimCopy head branch name to clipboard

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Commits on Jun 21, 2023

• update samtools faidx moduels

  subwaystation

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Commits on Aug 1, 2023

• bump to 1.1.0dev

  subwaystation

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• try manual fix of multiqc_config

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• Merge branch 'dev' into doi

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• Merge pull request #137 from nf-core/doi

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Commits on Aug 21, 2023

• update gfaffix, multiqc, samtools/faidx

  subwaystation

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  5375a6b

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• try to fix samtools/faidx

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• Merge pull request #145 from nf-core/update/modules

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• vg deconstruct 1.50.1

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• Merge branch 'dev' into update/modules

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• Merge pull request #146 from nf-core/update/modules

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Commits on Aug 23, 2023

• update smoothxg to v0.7.1

  subwaystation

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• Merge pull request #147 from nf-core/update/modules

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• also put DRAW into MultiQC report

  subwaystation

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  d1f0eec

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• Merge pull request #148 from nf-core/fix/multiqc

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• another MultiQC fix

  subwaystation

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• life is strange

  subwaystation

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• Merge pull request #149 from nf-core/fix/multiqc

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Commits on Sep 4, 2023

• Merge branch 'dev' into update_modules

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• update odgi and wfmash

  subwaystation

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• Merge pull request #150 from nf-core/update_modules

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Commits on Sep 21, 2023

• fix wfmash_sparse_map parameter

  subwaystation

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  a1f8072

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• add wfmash_sparse_map test

  subwaystation

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  16bcbcc

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• try linter fix

  subwaystation

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  6538720

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• try fix

  subwaystation

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  dc5495a

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• add wfmash_sparse_map to ignored params

  subwaystation

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  2904385

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• revert to string theory

  subwaystation

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• remove ignore parameter --wfmash_sparse_map

  subwaystation

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  a2a4fe4

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• update tests, add pattern

  subwaystation

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  7575ba1

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• update CI, fix linting error

  subwaystation

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  90ebc5d

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• Merge pull request #152 from nf-core/wfmash_sparse_map

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Commits on Sep 25, 2023

• Template update for nf-core/tools version 2.10

  nf-core-bot

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Commits on Oct 12, 2023

• bold commit to dev updating citations

  subwaystation

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  0db9b6b

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• merge conflicts

  FriederikeHanssen

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  f6aa812

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• fix modules.json

  FriederikeHanssen

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  5d07ebc

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• add missing citation

  FriederikeHanssen

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  ffc2e7b

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• more missing citations

  FriederikeHanssen

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Commits on Oct 13, 2023

• Merge pull request #153 from nf-core/nf-core-template-merge-2.10

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Commits on Oct 17, 2023

• Add metric endings for larger numbers

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  Peter Heringer

  committed
  8b3b1d4

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• Add test to ensure metric parameter suffix handling

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  Peter Heringer

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• Merge branch 'dev' of github.com:heringerp/pangenome into dev

  

  Peter Heringer

  committed
  1dfbd29

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• Fix parsing of default integers from the config

  

  Peter Heringer

  committed
  b4593b6

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• Fix variable namings and regex pattern

  

  Peter Heringer

  committed
  dc1c162

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• Remove unnecessary if

  

  Peter Heringer

  committed
  49dce5b

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• Merge pull request #155 from heringerp/dev

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Commits on Oct 31, 2023

• make the use of chunks explicit

  subwaystation

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  e441ca5

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• bug fix

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• Merge pull request #160 from nf-core/wfmash_power_up

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Commits on Dec 19, 2023

• Template update for nf-core/tools version 2.11

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Commits on Dec 20, 2023

• Template update for nf-core/tools version 2.11.1

  nf-core-bot

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Commits on Jan 29, 2024

• Template update for nf-core/tools version 2.12

  nf-core-bot

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• Merge remote-tracking branch 'origin/dev' into nf-core-template-merge-2.12

  subwaystation

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• prettier, but not pretty enough

  subwaystation

  committed
  87abe94

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• maybe happy

  subwaystation

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  86cdd25

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• fix linter

  subwaystation

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  fee6eb0

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• DE(A)VD container

  subwaystation

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  905e176

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• fix most linting errors

  subwaystation

  committed
  0191e18

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• oh be pretty, oh be smart: don't start

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Commits on Jan 30, 2024

• Merge pull request #163 from nf-core/nf-core-template-merge-2.12

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Commits on Feb 1, 2024

• update modules

  subwaystation

  committed
  a8f4b2b

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• revert wfmash to 0.10.5

  subwaystation

  committed
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• now

  subwaystation

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• Merge pull request #164 from nf-core/update_modules

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Commits on Feb 7, 2024

• update wfmash, multiqc

  subwaystation

  committed
  c621412

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• bug fix

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  59b0113

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• another try

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Commits on Feb 8, 2024

• another wfmash update

  subwaystation

  committed
  c873b10

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• another wfmash update

  subwaystation

  committed
  e3bd04c

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• Put functions within closure to evaluate them properly.

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• Merge pull request #166 from nf-core/config_function_fix

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• Merge branch 'dev' into update_modules

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• Merge pull request #165 from nf-core/update_modules

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Commits on Feb 20, 2024

• fix delim bug

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