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Minor updates for seattlechildrens #1131

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Merged
lvclark merged 5 commits into from
Jun 16, 2026
Merged

Minor updates for seattlechildrens #1131

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9efca35
Update nf version and fix conda channel_priority command
lvclark May 20, 2026
ef7e327
Update time syntax
lvclark Jun 16, 2026
84f2bd2
Update Nextflow version again
lvclark Jun 16, 2026
2fa3acf
Simplify time specification since docs assume non-core association
lvclark Jun 16, 2026
bd1f52d
Merge branch 'master' into sasquatch_patch4
lvclark Jun 16, 2026
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2 changes: 1 addition & 1 deletion conf/seattlechildrens.config
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Expand Up @@ -9,7 +9,7 @@ process {
executor = 'slurm'
queue = 'cpu-core'
memory = 7500.MB
time = '72h'
time = 72.h
clusterOptions = "--account ${System.getenv("ASSOC")}"

withLabel:'process_gpu' {
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7 changes: 3 additions & 4 deletions docs/seattlechildrens.md
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Expand Up @@ -29,8 +29,7 @@ channels:
- conda-forge
dependencies:
- python>=3.9
- nextflow==25.04.8
- nf-core==3.4.1
- nextflow==26.04.3
- graphviz
```

Expand All @@ -40,9 +39,9 @@ Make sure that channel priority is set to flexible using the following comments:

```bash
# print your current conda settings
mamba config --describe channel_priority
conda config --describe channel_priority
# set to flexible if not already done
mamba config --set channel_priority flexible
conda config --set channel_priority flexible
```

3. Create the _Nextflow_ `mamba` environment
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