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Minor updates for seattlechildrens#1131

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lvclark merged 5 commits into
nf-core:masterfrom
lvclark:sasquatch_patch4
Jun 16, 2026
Merged

Minor updates for seattlechildrens#1131
lvclark merged 5 commits into
nf-core:masterfrom
lvclark:sasquatch_patch4

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@lvclark

@lvclark lvclark commented Jun 16, 2026

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name: Minor updates for seattlechildrens
about: Fix conda config command, update time specification to preferred syntax

Please follow these steps before submitting your PR:

  • If your PR is a work in progress, include [WIP] in its title
  • Your PR targets the master branch
  • You've included links to relevant issues, if any

Steps for adding a new config profile:

  • Add your custom config file to the conf/ directory
  • Add your documentation file to the docs/ directory
  • Add your custom profile to the nfcore_custom.config file in the top-level directory
  • Add your profile name to the profile: scope in .github/workflows/main.yml
  • OPTIONAL: Add your custom profile path and GitHub user name to .github/CODEOWNERS (**/<custom-profile>** @<github-username>)

It was brought to my attention that the mamba config commands don't work, so I primarily wanted to update those. I also noticed the that Nextflow plugin for VS Code did not like having a time in quotes, so I fixed that.

@lvclark lvclark requested a review from ybaeus June 16, 2026 18:46
@lvclark lvclark merged commit 65e78f1 into nf-core:master Jun 16, 2026
159 of 162 checks passed
@lvclark lvclark deleted the sasquatch_patch4 branch June 16, 2026 19:08
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2 participants