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fix report and nf-test trigger #935

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Merged
d4straub merged 3 commits into from
Dec 12, 2025
Merged

fix report and nf-test trigger #935

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2cfd40a
fix typo in report template
d4straub Dec 11, 2025
d030121
trgger nf-test for more files
d4straub Dec 11, 2025
55f55fe
update CHANGELOG
d4straub Dec 11, 2025
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2 changes: 1 addition & 1 deletion CHANGELOG.md
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Expand Up @@ -15,7 +15,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
### `Fixed`

[#926](https://github.com/nf-core/ampliseq/pull/926) - Template update for nf-core/tools version 3.4.1
[#929](https://github.com/nf-core/ampliseq/pull/929) - A bug in a dependency of MultiQC can lead (rarely) to plot generation being omitted, without warning. In that case, the subsequent pipeline summary report failed previously, now it gracefully handles that issue.
[#929](https://github.com/nf-core/ampliseq/pull/929),[#935](https://github.com/nf-core/ampliseq/pull/935) - A bug in a dependency of MultiQC can lead (rarely) to plot generation being omitted, without warning. In that case, the subsequent pipeline summary report failed previously, now it gracefully handles that issue.

### `Dependencies`

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2 changes: 1 addition & 1 deletion assets/report_template.Rmd
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Expand Up @@ -252,7 +252,7 @@ if ( file.exists(params$mqc_plot) ) {
knitr::include_graphics(params$mqc_plot)
}
```
```{r, !isFALSE(params$mqc_plot), results='asis'}
```{r, eval = !isFALSE(params$mqc_plot), results='asis'}
if ( !file.exists(params$mqc_plot) ) {
cat(paste0("
_This plot is missing. That is only a visual mishap, all data can be found in the MultiQC report._
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2 changes: 1 addition & 1 deletion nf-test.config
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Expand Up @@ -15,7 +15,7 @@ config {
profile "test"

// list of filenames or patterns that should be trigger a full test run
triggers 'nextflow.config', 'nf-test.config', 'conf/test.config', 'tests/nextflow.config', 'tests/.nftignore'
triggers 'nextflow.config', 'nf-test.config', 'conf/test.config', 'tests/nextflow.config', 'tests/.nftignore', 'bin/*', 'assets/schema_input.json', 'nextflow_schema.json', 'assets/report_template.Rmd'

// load the necessary plugins
plugins {
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