-
23 January 2025: Include a new
mlr_lineage_fitness
coloring. This uses live estimates of lineage fitness from nextstrain.org/sars-cov-2/forecasts to provide a strain-level coloring to the tree. The lineage fitness estimates are automatically updated as new data comes in and so this coloring should stay current. PR 1169 -
23 January 2025: Remove previous fitness-related colorings of
mutational_fitness
,logistic_growth
andcurrent_frequency
(used by logistic growth). The newmlr_lineage_fitess
should be more accurate / more current than these previous approaches. PR 1169