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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for novel coronavirus SARS-CoV-2

    Python 1.4k 403

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 270 128

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 296 162

Repositories

Showing 10 of 94 repositories
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org’s past year of commit activity
    JavaScript 91 AGPL-3.0 48 69 (1 issue needs help) 12 Updated Jan 3, 2025
  • auspice.us Public
    nextstrain/auspice.us’s past year of commit activity
    JavaScript 13 8 7 2 Updated Jan 3, 2025
  • auspice Public

    Web app for visualizing pathogen evolution

    nextstrain/auspice’s past year of commit activity
    JavaScript 296 AGPL-3.0 162 238 (4 issues need help) 34 Updated Jan 3, 2025
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur’s past year of commit activity
    Python 270 AGPL-3.0 128 239 (1 issue needs help) 54 Updated Jan 3, 2025
  • lassa Public

    Nextstrain build for Lassa virus

    nextstrain/lassa’s past year of commit activity
    Python 0 5 10 1 Updated Jan 3, 2025
  • seasonal-flu Public

    Scripts. config, and snakefiles for seasonal-flu nextstrain builds

    nextstrain/seasonal-flu’s past year of commit activity
    Python 46 27 23 0 Updated Jan 3, 2025
  • fauna Public

    RethinkDB database to support real-time virus analysis

    nextstrain/fauna’s past year of commit activity
    Python 33 AGPL-3.0 13 20 12 Updated Jan 3, 2025
  • rabies Public
    nextstrain/rabies’s past year of commit activity
    Python 0 0 6 1 Updated Jan 2, 2025
  • dengue Public

    Nextstrain build for dengue virus

    nextstrain/dengue’s past year of commit activity
    Python 8 11 13 (1 issue needs help) 1 Updated Jan 2, 2025
  • avian-flu Public

    Nextstrain build for avian influenza viruses

    nextstrain/avian-flu’s past year of commit activity
    Python 22 8 11 8 Updated Jan 1, 2025
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