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Update exclude
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trvrb committed Mar 16, 2023
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19 changes: 19 additions & 0 deletions defaults/exclude.txt
Original file line number Diff line number Diff line change
Expand Up @@ -69,6 +69,7 @@ Iceland/288/2020
Ireland/COR-20134/2020
Netherlands/Oisterwijk_1364072/2020
Netherlands/Utrecht_1364066/2020
Pakistan/JRCGR_SCV-54_IBGE-06/2020
Pakistan/Manga-KPK/2020
Qatar/QA02/2020
Qatar/QA08/2020
Expand Down Expand Up @@ -2614,6 +2615,8 @@ Netherlands/Leiden-0001/2020
Russia/Nsk-FRCFTM-1-15a/2020
#V76/2
mink/USA/OR-20-034329-010/2020
mink/Poland/01965-9/2023
mink/Poland/01965-12/2023
#V1
Russia/SPE-RII-33958V/2020
Russia/NVS-RII-MH1097V/2020
Expand Down Expand Up @@ -10917,8 +10920,11 @@ OV104542
OV104635
OV106697
OV108314
OV110709
OV114059
OV111669
OV111753
OV111791
OV113567
OV114062
MWI/MLW00073/2020
Expand Down Expand Up @@ -10973,6 +10979,8 @@ USA/TN-SPHL-0038/2021 # Strain has same BioSample accession (SAMN21899799) as US

# missing mutations relative to date
Australia/NT228/2021
Australia/VIC18809/2021
Australia/VIC18830/2021
Belize/CML-178/2021
CAN/KB-B-001/2021
CostaRica/CABANA-CR-UCR-INCIENSA-ITV-UBA-Uda-UGA-IMSS-UPC-2039-655629/2021
Expand All @@ -10987,6 +10995,7 @@ EGY/CCHE57357_W3_A099/2021
EGY/CCHE57357_W3_A116/2021
EGY/CCHE57357_W3_A152/2021
EGY/CCHE57357_Wave_3_A022/2021
EGY/EGY_CCHE57357_P_37/2020
EGY/EGY_CCHE57357_A_54/2020
EGY/Egypt-Army-Thirdwave350/2021
EGY/Egypt-Army-Thirdwave352/2021
Expand All @@ -10997,7 +11006,9 @@ Egypt/ARMY-47/2021
Egypt/ARMY-281/2021
Egypt/ARMY-350/2021
Egypt/ARMY-351/2021
Egypt/ARMY-352/2021
Egypt/ARMY-353/2021
GMB/4448/2020
IRQ/NAJAF/2022
Morocco/RA92C/2020
Morocco/RA112-3C/2021
Expand All @@ -11010,15 +11021,18 @@ Nigeria/MRL-0S-1885/2021
OM108445
PAK/JRCGR_KHI_SCV-184/2021
PAK/JRCGR_SCV-54_IBGE-06/2020
PAK/khi-w1-s5/2020
PAK/WA-UW-1729/2020
RUS/VIC01/2021
Senegal/SN-MBO-211915/2021
Thailand/63005380__2019/2020
UnitedArabEmirates/1046/2020
USA/CA-CHLA-PLM08055689/2020
USA/FL-CDC-ASC210247553/2021
USA/GA-CDC-ASC210274744/2021
USA/LA-CDC-ASC210310458/2021
USA/MI-CDC-ASC210481590/2021
USA/MO-CDC-ASC210273594/2021
USA/ND-UNDGC-G2021_58_50/2021
USA/ND-UNDGC-G2021_124_58/2021
USA/NMINBRE-ILLUMINA-WGS-215780/2020
Expand Down Expand Up @@ -11074,6 +11088,7 @@ Comoros/SS10405/2022
Comoros/SS10411/2022
England/LSPA-3F0C6DD/2022
Gambia/16-186BV/2022
Iraq/Erbil-10/2022
TrinidadandTobago/397052/2022
Vietnam/PIHCM_1540/2022

Expand Down Expand Up @@ -11107,6 +11122,7 @@ USA/UT-04508/2020 # Strain has same BioSample accession (SAMN15901824) as USA/
USA/UT-08768/2020 # Strain has same BioSample accession (SAMN15901842) as USA/UT-04409/2020

# too many mutations relative to date
DRC/ILRI_COVM00354/2020
Lebanon/LAU-R84/2020
Lebanon/LAU-R89/2020
Lebanon/LAU-R95/2020
Expand Down Expand Up @@ -11158,6 +11174,9 @@ Israel/ICH-741238457/2020
# Early BA.2.12.1 with excess mutations
Qatar/DA-USAFSAM-S15231/2022

# Early / divergent BA.5
Bolivia/CBBA-PUC_MVL_3357/2022

# Omicrons with too early date
env/Austria/CeMM31016/2021
Eswatini/N22721/2021
Expand Down

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