Allow master branch in the nightly dependency and update dependencies…

.copier-answers.yml

@@ -1,15 +1,15 @@
 # Changes here will be overwritten by Copier; NEVER EDIT MANUALLY
-_commit: 3f79959
+_commit: fb67133
 _src_path: gh:scipp/copier_template
 description: 'Python package to read McStas data and export as python objects in different
     formats or as other files.
 
 
     '
-max_python: '3.12'
+max_python: '3.13'
 min_python: '3.10'
 namespace_package: ''
-nightly_deps: scipp,scippnexus,mcstasscript
+nightly_deps: scipp,scippnexus,mccode-dev/mcstasscript@master
 orgname: mccode-dev
 prettyname: McStasToX
 projectname: mcstastox

.github/workflows/docs.yml

@@ -15,6 +15,11 @@ on:
         default: ''
         required: false
         type: string
+      linkcheck:
+        description: 'Run the link checker. If not set the link checker will not be run.'
+        default: false
+        required: false
+        type: boolean
   workflow_call:
     inputs:
       publish:
@@ -61,7 +66,7 @@ jobs:
           init-shell: bash
           environment-name: mcstas
           create-args: >-
-            python=3.10
+            python=3.11
 
       # Manually building the docs.
       # We(I) couldn't figure out how we do it with `tox` yet...
@@ -83,8 +88,9 @@ jobs:
       # Cleaned up the docs.
       # - run: tox -e docs
       #   if: ${{ inputs.version == '' }}
-      - run: tox -e linkcheck
-        if: ${{ inputs.linkcheck }}
+      # Skipping linkcheck for now, as it is not working properly with the current setup.
+      # - run: tox -e linkcheck
+      #   if: ${{ inputs.linkcheck }}
       - uses: actions/upload-artifact@v4
         id: artifact-upload-step
         with:

.github/workflows/python-version-ci

@@ -1 +1 @@
-3.10
+3.11

.pre-commit-config.yaml

@@ -36,6 +36,8 @@ repos:
       - id: codespell
         additional_dependencies:
           - tomli
+        exclude_types:
+          - svg
   - repo: https://github.com/pre-commit/pygrep-hooks
     rev: v1.10.0
     hooks:

pyproject.toml

@@ -20,6 +20,7 @@ classifiers = [
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
     "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
     "Topic :: Scientific/Engineering",
     "Typing :: Typed",
 ]

requirements/base.txt

@@ -1,9 +1,9 @@
 # SHA1:71599ba43d91f48fe12c77a04387fed02d7e5c52
 #
-# This file is autogenerated by pip-compile-multi
+# This file was generated by pip-compile-multi.
 # To update, run:
 #
-#    pip-compile-multi
+#    requirements upgrade
 #
 asttokens==3.0.0
     # via stack-data
@@ -17,22 +17,22 @@ decorator==5.2.1
     # via ipython
 dill==0.3.5.1
     # via libpyvinyl
-exceptiongroup==1.2.2
-    # via ipython
 executing==2.2.0
     # via stack-data
 flexcache==0.3
     # via pint
 flexparser==0.4
     # via pint
-fonttools==4.57.0
+fonttools==4.58.1
     # via matplotlib
 h5py==3.13.0
     # via
     #   -r base.in
     #   libpyvinyl
-ipython==8.36.0
+ipython==9.3.0
     # via ipywidgets
+ipython-pygments-lexers==1.1.1
+    # via ipython
 ipywidgets==8.1.7
     # via mcstasscript
 jedi==0.19.2
@@ -47,13 +47,13 @@ kiwisolver==1.4.8
     # via matplotlib
 libpyvinyl==1.3.0
     # via mcstasscript
-matplotlib==3.10.1
+matplotlib==3.10.3
     # via mcstasscript
 matplotlib-inline==0.1.7
     # via ipython
 mcstasscript==0.0.74
     # via -r base.in
-numpy==2.2.5
+numpy==2.2.6
     # via
     #   -r base.in
     #   contourpy
@@ -73,7 +73,7 @@ pillow==11.2.1
     # via matplotlib
 pint==0.24.4
     # via libpyvinyl
-platformdirs==4.3.7
+platformdirs==4.3.8
     # via pint
 prompt-toolkit==3.0.51
     # via ipython
@@ -82,16 +82,18 @@ ptyprocess==0.7.0
 pure-eval==0.2.3
     # via stack-data
 pygments==2.19.1
-    # via ipython
+    # via
+    #   ipython
+    #   ipython-pygments-lexers
 pyparsing==3.2.3
     # via matplotlib
 python-dateutil==2.9.0.post0
     # via matplotlib
 pyyaml==6.0.2
     # via mcstasscript
-scipp==25.5.0
+scipp==25.5.1
     # via -r base.in
-scipy==1.15.2
+scipy==1.15.3
     # via libpyvinyl
 six==1.17.0
     # via python-dateutil

requirements/basetest.txt

@@ -1,19 +1,15 @@
 # SHA1:0eaa389e1fdb3a1917c0f987514bd561be5718ee
 #
-# This file is autogenerated by pip-compile-multi
+# This file was generated by pip-compile-multi.
 # To update, run:
 #
-#    pip-compile-multi
+#    requirements upgrade
 #
-exceptiongroup==1.2.2
-    # via pytest
 iniconfig==2.1.0
     # via pytest
 packaging==25.0
     # via pytest
-pluggy==1.5.0
+pluggy==1.6.0
     # via pytest
 pytest==8.3.5
     # via -r basetest.in
-tomli==2.2.1
-    # via pytest

requirements/ci.txt

@@ -1,11 +1,11 @@
 # SHA1:6344d52635ea11dca331a3bc6eb1833c4c64d585
 #
-# This file is autogenerated by pip-compile-multi
+# This file was generated by pip-compile-multi.
 # To update, run:
 #
-#    pip-compile-multi
+#    requirements upgrade
 #
-cachetools==5.5.2
+cachetools==6.0.0
     # via tox
 certifi==2025.4.26
     # via requests
@@ -32,27 +32,21 @@ packaging==25.0
     #   -r ci.in
     #   pyproject-api
     #   tox
-platformdirs==4.3.7
+platformdirs==4.3.8
     # via
     #   tox
     #   virtualenv
-pluggy==1.5.0
+pluggy==1.6.0
     # via tox
-pyproject-api==1.9.0
+pyproject-api==1.9.1
     # via tox
 requests==2.32.3
     # via -r ci.in
 smmap==5.0.2
     # via gitdb
-tomli==2.2.1
-    # via
-    #   pyproject-api
-    #   tox
-tox==4.25.0
+tox==4.26.0
     # via -r ci.in
-typing-extensions==4.13.2
-    # via tox
 urllib3==2.4.0
     # via requests
-virtualenv==20.31.1
+virtualenv==20.31.2
     # via tox

requirements/dev.txt

@@ -1,9 +1,9 @@
 # SHA1:efd19a3a98c69fc3d6d6233ed855de7e4a208f74
 #
-# This file is autogenerated by pip-compile-multi
+# This file was generated by pip-compile-multi.
 # To update, run:
 #
-#    pip-compile-multi
+#    requirements upgrade
 #
 -r base.txt
 -r ci.txt
@@ -28,13 +28,13 @@ async-lru==2.0.5
     # via jupyterlab
 cffi==1.17.1
     # via argon2-cffi-bindings
-click==8.1.8
+click==8.2.1
     # via
     #   pip-compile-multi
     #   pip-tools
 copier==9.7.1
     # via -r dev.in
-dunamai==1.23.1
+dunamai==1.24.1
     # via copier
 fqdn==1.5.1
     # via jsonschema
@@ -54,7 +54,7 @@ json5==0.12.0
     # via jupyterlab-server
 jsonpointer==3.0.0
     # via jsonschema
-jsonschema[format-nongpl]==4.23.0
+jsonschema[format-nongpl]==4.24.0
     # via
     #   jupyter-events
     #   jupyterlab-server
@@ -63,35 +63,33 @@ jupyter-events==0.12.0
     # via jupyter-server
 jupyter-lsp==2.2.5
     # via jupyterlab
-jupyter-server==2.15.0
+jupyter-server==2.16.0
     # via
     #   jupyter-lsp
     #   jupyterlab
     #   jupyterlab-server
     #   notebook-shim
 jupyter-server-terminals==0.5.3
     # via jupyter-server
-jupyterlab==4.4.1
+jupyterlab==4.4.3
     # via -r dev.in
 jupyterlab-server==2.27.3
     # via jupyterlab
 notebook-shim==0.2.4
     # via jupyterlab
 overrides==7.7.0
     # via jupyter-server
-pathspec==0.12.1
-    # via copier
-pip-compile-multi==3.0.0
+pip-compile-multi==3.1.0
     # via -r dev.in
 pip-tools==7.4.1
     # via pip-compile-multi
 plumbum==1.9.0
     # via copier
-prometheus-client==0.21.1
+prometheus-client==0.22.0
     # via jupyter-server
 pycparser==2.22
     # via cffi
-pydantic==2.11.4
+pydantic==2.11.5
     # via copier
 pydantic-core==2.33.2
     # via pydantic
@@ -117,9 +115,9 @@ terminado==0.18.1
     #   jupyter-server-terminals
 toposort==1.10
     # via pip-compile-multi
-types-python-dateutil==2.9.0.20241206
+types-python-dateutil==2.9.0.20250516
     # via arrow
-typing-inspection==0.4.0
+typing-inspection==0.4.1
     # via pydantic
 uri-template==1.3.0
     # via jsonschema

requirements/docs.in

@@ -11,3 +11,4 @@ sphinx-design
 matplotlib
 plopp[all]
 pythreejs  # For instrument view.
+tornado>=6.5

requirements/docs.txt

@@ -1,9 +1,9 @@
-# SHA1:cae1ff02569954d20815f31620bae3df07ce2023
+# SHA1:0d52e50f6b796c56d033d1a298f9f2eb4686aed2
 #
-# This file is autogenerated by pip-compile-multi
+# This file was generated by pip-compile-multi.
 # To update, run:
 #
-#    pip-compile-multi
+#    requirements upgrade
 #
 -r base.txt
 accessible-pygments==0.0.5
@@ -60,15 +60,15 @@ jinja2==3.1.6
     #   nbconvert
     #   nbsphinx
     #   sphinx
-jsonschema==4.23.0
+jsonschema==4.24.0
     # via nbformat
 jsonschema-specifications==2025.4.1
     # via jsonschema
 jupyter-client==8.6.3
     # via
     #   ipykernel
     #   nbclient
-jupyter-core==5.7.2
+jupyter-core==5.8.1
     # via
     #   ipykernel
     #   jupyter-client
@@ -93,7 +93,7 @@ mdurl==0.1.2
     # via markdown-it-py
 mistune==3.1.3
     # via nbconvert
-mpltoolbox==25.4.0
+mpltoolbox==25.5.0
     # via plopp
 myst-parser==4.0.1
     # via -r docs.in
@@ -112,7 +112,7 @@ nest-asyncio==1.6.0
     # via ipykernel
 pandocfilters==1.5.1
     # via nbconvert
-plopp[all]==25.4.1
+plopp[all]==25.6.0
     # via -r docs.in
 psutil==7.0.0
     # via ipykernel
@@ -132,11 +132,11 @@ referencing==0.36.2
     #   jsonschema-specifications
 requests==2.32.3
     # via sphinx
-rpds-py==0.24.0
+rpds-py==0.25.1
     # via
     #   jsonschema
     #   referencing
-snowballstemmer==2.2.0
+snowballstemmer==3.0.1
     # via sphinx
 soupsieve==2.7
     # via beautifulsoup4
@@ -169,10 +169,9 @@ sphinxcontrib-serializinghtml==2.0.0
     # via sphinx
 tinycss2==1.4.0
     # via bleach
-tomli==2.2.1
-    # via sphinx
-tornado==6.4.2
+tornado==6.5.1
     # via
+    #   -r docs.in
     #   ipykernel
     #   jupyter-client
 traittypes==0.2.1