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Pull requests list

Makes it easier for users to update for longer amplicons
#55 opened Aug 2, 2021 by bwlang Loading… updated Aug 2, 2021
Enable longer reads by default for longer insert protocols
#54 opened Aug 1, 2021 by bwlang Loading… updated Sep 1, 2021
add report and fail level for lint
#63 opened Sep 21, 2021 by bernt-matthias Loading… updated Sep 24, 2021
Expression Atlas Smartseq/Droplet downstream workflow
#64 opened Oct 4, 2021 by pcm32 Loading… updated Oct 13, 2021
Create CONTRIBUTING.md
#61 opened Sep 20, 2021 by bwlang Loading… updated Nov 26, 2021
Update sarscov2 pe wgs ivar analysis workflow
#98 opened May 12, 2022 by lebarsarthur Loading… updated May 13, 2022
Move SARS-CoV-2 workflows to virology folder
#180 opened Feb 24, 2023 by kciy Loading… updated Feb 24, 2023
Add RepeatElement workflow
#231 opened Oct 16, 2023 by rlibouba Draft updated Oct 23, 2023
pox-virus-amplicon: update .dockstore.yml
#181 opened Feb 24, 2023 by simleo Loading… updated Nov 7, 2023
Short workflow for lineage analysis wastewater sars-cov-2 metatranscriptomic data
#191 opened Apr 18, 2023 by PlushZ Loading… updated Nov 8, 2023
Short workflow for lineage analysis wastewater sars-cov-2 ampliconic data
#190 opened Apr 18, 2023 by PlushZ Loading… updated Nov 8, 2023
Fix tests
#317 opened Dec 5, 2023 by mvdbeek Draft updated Dec 6, 2023
Add abromics bacterial hybrid assembly and annotation workflow
#324 opened Jan 26, 2024 by pimarin Loading… updated Jan 26, 2024
6 tasks done
split-fasta: initial commit
#173 opened Feb 3, 2023 by bernt-matthias Loading… updated Mar 5, 2024
add taxonomic analysis and human reads removal wf
#192 opened Apr 18, 2023 by PlushZ Loading… updated Mar 5, 2024
add new workflow for WW sars-cov-2 amliconic analysis
#154 opened Dec 6, 2022 by PlushZ Loading… updated May 8, 2024
Adding a Microbiome Workflow PathoGFAIR
#463 opened Jul 3, 2024 by EngyNasr Loading… updated Jul 3, 2024
[WIP] fix dada2 workflows
#524 opened Sep 19, 2024 by bernt-matthias Loading… updated Sep 19, 2024
Updating workflows/variant-calling/variation-reporting from 0.1 to 0.2
#166 opened Dec 17, 2022 by planemo-autoupdate Loading… updated Sep 24, 2024
Updating workflows/repeatmasking from 0.1 to 0.2
#278 opened Nov 10, 2023 by gxydevbot Loading… updated Sep 24, 2024
Fix test syntax issues.
#530 opened Sep 23, 2024 by jmchilton Loading… updated Sep 30, 2024
ProTip! Updated in the last three days: updated:>2025-02-14.