Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update sarscov2 pe wgs ivar analysis workflow #98

Open
wants to merge 7 commits into
base: main
Choose a base branch
from

Conversation

lebarsarthur
Copy link

sars-cov-2-pe-illumina-artic-ivar-analysis workflow update

Changes

@@ -806,20 +834,20 @@
},
"tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1",
Copy link
Contributor

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

The "tool_id" here and for the other updated steps needs to be updated, too. Same for "content_id" at the beginning of updated steps.

Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Can we do this with the autoupdate bot ? Shouldn't the bot have proposed those changes ?

Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

The bot is only running once a month at the moment (on the 17th to be more precise).

Copy link
Author

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Thank you for the input, I matched the tool_ids and content_ids for all the tools

Copy link
Member

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Can we make that more often ? I don't think we need to hold back ?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

4 participants