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Apply metadata setter for default to conditionals #7197

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Apply metadata setter for default to conditionals #7197

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59c9687
Apply metadata setter for default to conditionals
pvanheus Jan 9, 2019
a8729fa
* Add test, fix W293 whitespace lint warning
pvanheus Jan 10, 2019
e55cc42
fix formatting
pvanheus Feb 7, 2019
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17 changes: 16 additions & 1 deletion lib/galaxy/tools/actions/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -743,10 +743,25 @@ def set_metadata_defaults(self, output, dataset, tool, on_text, trans, incoming,
<action name="column_names" type="metadata" default="${','.join([input.name for input in $individual_inputs ])}" />
</actions>
</data>

or

<actions>
<conditional name="format">
<when value="something_good">
<action type="metadata" name="column_names" default="one,two,three" />
</when>
</conditional>
</actions>
"""
if output.actions:
action_list = output.actions.actions
for action in output.actions.actions:
if action.tag == "metadata" and action.default:
if action.tag == "conditional":
for case in action.cases:
action_list.extend(case.actions)
for action in action_list:
if action.tag == "metadata" and hasattr(action, "default") and action.default:
metadata_new_value = fill_template(action.default, context=params).split(",")
dataset.metadata.__setattr__(str(action.name), metadata_new_value)

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