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@axondeepseg

AxonDeepSeg

Segmentation software for microscopy data of nerve fibers based on deep learning.

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  1. axondeepseg axondeepseg Public

    Axon/Myelin segmentation using Deep Learning

    Python 121 32

Repositories

Showing 10 of 30 repositories
  • data_axondeepseg_sem Public

    SEM dataset for AxonDeepSeg. Example dataset containing scanning electron microscopy (SEM) data to illustrate BIDS convention.

    axondeepseg/data_axondeepseg_sem’s past year of commit activity
    2 MIT 0 3 1 Updated May 9, 2025
  • axondeepseg Public

    Axon/Myelin segmentation using Deep Learning

    axondeepseg/axondeepseg’s past year of commit activity
    Python 121 MIT 32 39 5 Updated May 9, 2025
  • ASTIH Public

    Axon Segmentation Training Initiative for Histology: A collection of datasets for axon and myelin segmentation in microscopy images.

    axondeepseg/ASTIH’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 8, 2025
  • data-testing Public

    Images and files used for software testing (unit and integration tests).

    axondeepseg/data-testing’s past year of commit activity
    0 MIT 0 0 0 Updated May 7, 2025
  • data_ci Public
    axondeepseg/data_ci’s past year of commit activity
    0 0 0 0 Updated Apr 29, 2025
  • seg_ci Public
    axondeepseg/seg_ci’s past year of commit activity
    Shell 0 0 0 0 Updated Apr 29, 2025
  • model_seg_unmyelinated_tem Public

    Model for unmyelinated axon segmentation in TEM images, based on nnUNet

    axondeepseg/model_seg_unmyelinated_tem’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 1, 2025
  • axon-detection Public

    Exploration of object detection applied to the AxonDeepSeg project

    axondeepseg/axon-detection’s past year of commit activity
    Jupyter Notebook 1 1 8 1 Updated Mar 26, 2025
  • model-seg-human-brain-cars Public

    Axon and myelin segmentation model in histology images to quantify myelination in the human brain. Training data was acquired in the uncinate fasciculus using CARS microscopy.

    axondeepseg/model-seg-human-brain-cars’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 3, 2025
  • doc-figures Public

    Repository that contains most figures for axondeepseg documentation.

    axondeepseg/doc-figures’s past year of commit activity
    0 MIT 0 0 0 Updated Dec 20, 2024
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