brand updates

CMake/conf.py.cmake

@@ -18,8 +18,8 @@
 # -- Project information -----------------------------------------------------
 
 project = "AGAVE"
-copyright = "2020, Allen Institute for Cell Science"
-author = "Allen Institute for Cell Science"
+copyright = "2020-26, Allen Institute"
+author = "Allen Institute"
 
 # The full version, including alpha/beta/rc tags
 release = "@PROJECT_VERSION@"

CMakeLists.txt

@@ -148,7 +148,7 @@ CONFIGURE_FILE(${CMAKE_SOURCE_DIR}/CMake/conf.py.cmake ${CMAKE_SOURCE_DIR}/docs/
 # #####################
 find_package(Qt6QTiffPlugin 6.9.3 REQUIRED PATHS ${Qt6Gui_DIR})
 
-set(CPACK_PACKAGE_VENDOR "Allen Institute for Cell Science")
+set(CPACK_PACKAGE_VENDOR "Allen Institute")
 set(CPACK_PACKAGE_DESCRIPTION_SUMMARY "AGAVE is a viewer for 4D multichannel microscopy images, using physically based lighting and rendering.")
 
 set(CPACK_PACKAGE_NAME "AGAVE")
@@ -388,7 +388,7 @@ else() # Linux
   )
   set(CPACK_GENERATOR "DEB")
   set(CPACK_DEBIAN_PACKAGE_NAME "agave")
-  set(CPACK_PACKAGE_CONTACT "Allen Institute for Cell Science")
+  set(CPACK_PACKAGE_CONTACT "Allen Institute")
 
   include(CPack)
 endif(WIN32)

CONTRIBUTING.md

@@ -1,6 +1,6 @@
-# Contributing to Allen Institute for Cell Science Open Source
+# Contributing to Allen Institute Open Source
 
-Thank you for your interest in contributing to this Allen Institute for Cell Science open source project! This document is
+Thank you for your interest in contributing to this Allen Institute open source project! This document is
 a set of guidelines to help you contribute to this project.
 
 ## Code of Conduct

HELP.txt

@@ -8,7 +8,7 @@ The volume viewer is designed and optimized for display of multi-channel 16-bit
 2. Unzip the zip file and run the AGAVE app.  A GUI window will open. If initialization fails for some reason, a logfile.log file will be produced in the same directory as the app.
 
 3. File-->Open volume...  The viewer currently only supports .tif or .czi files containing z-stack data.  Currently only 16-bit unsigned pixels are supported.  
-The volume data must fit in GPU memory uncompressed, so please try loading no more than a few GB.  Files containing time sequences will only load the first time sample.  The test data set for the development of this viewer was the data set of the Allen Institute for Cell Science.  Images from that data set are found at https://www.allencell.org/3d-cell-viewer.html and https://www.allencell.org/cell-feature-explorer.html where you can load a cell into the 3D viewer in your browser and click the Download button to get the full resolution OME TIFF file. Those images should load correctly into this viewer.
+The volume data must fit in GPU memory uncompressed, so please try loading no more than a few GB.  Files containing time sequences will only load the first time sample.  The test data set for the development of this viewer was data from Cell Science at the Allen Institute.  Images from that data set are found at https://www.allencell.org/3d-cell-viewer.html and https://www.allencell.org/cell-feature-explorer.html where you can load a cell into the 3D viewer in your browser and click the Download button to get the full resolution OME TIFF file. Those images should load correctly into this viewer.
 
 4. Initially, it is likely that your volume data will appear as a solid brick.  The Appearance panel is the one to focus on first.  Note that you can "tear away" the tab to place it anywhere on your desktop and resize it. (Drag and drop from the "Appearance" title area.)
 

agave_app/aboutDialog.cpp

@@ -37,13 +37,13 @@ AboutDialog::AboutDialog()
   layout->addWidget(text);
 
   label = new QLabel(this);
-  label->setText(
-    "AGAVE is made possible through the hard work and dedication of engineers, designers, and scientists at the Allen "
-    "Institute for Cell Science and through the continued philanthropy of the Paul Allen estate."
-    "<br>"
-    "<br>"
-    "<b>Copyright 2023 The Allen Institute.  All rights reserved.</b><br>"
-    "");
+  label->setText("AGAVE is made possible through the hard work and dedication of engineers, designers, and scientists "
+                 "in the cell science accelerator at the Allen "
+                 "Institute and through the continued philanthropy of the Paul Allen estate."
+                 "<br>"
+                 "<br>"
+                 "<b>Copyright 2023-26 The Allen Institute.  All rights reserved.</b><br>"
+                 "");
   label->setWordWrap(true);
   layout->addWidget(label);
 

agave_app/citationDialog.cpp

@@ -25,7 +25,7 @@ CitationDialog::CitationDialog()
   auto citationtext = new QLabel(this);
   citationtext->setText("Daniel Toloudis, AGAVE Contributors (" + syear +
                         "). AGAVE: Advanced GPU Accelerated Volume Explorer (Version " + qApp->applicationVersion() +
-                        ") [Computer software]. Allen Institute for Cell Science. <a "
+                        ") [Computer software]. Allen Institute, Cell Science. <a "
                         "href=\"" +
                         agaveUrl + "\"></a>");
   citationtext->setFrameShape(QFrame::Panel);
@@ -52,7 +52,7 @@ CitationDialog::CitationDialog()
                          "&nbsp;&nbsp;url       = {" +
                          agaveUrl +
                          "},<br/>"
-                         "&nbsp;&nbsp;organization = {Allen Institute for Cell Science},<br/>"
+                         "&nbsp;&nbsp;organization = {Allen Institute, Cell Science},<br/>"
                          "&nbsp;&nbsp;note      = {Computer Software}<br/>"
                          "}</tt><br/>");
   citationtext2->setFrameShape(QFrame::Panel);

agave_app/main.cpp

@@ -176,7 +176,7 @@ main(int argc, char* argv[])
     QApplication::setAttribute(Qt::AA_EnableHighDpiScaling);
     QApplication::setStyle("fusion");
     AgaveApplication a(argc, argv);
-    AgaveApplication::setOrganizationName("Allen Institute for Cell Science");
+    AgaveApplication::setOrganizationName("Allen Institute");
     AgaveApplication::setOrganizationDomain("allencell.org");
     AgaveApplication::setApplicationName("AGAVE");
     AgaveApplication::setApplicationVersion(AICS_VERSION_STRING);

agave_app/version.rc

@@ -18,7 +18,7 @@ BEGIN
   BEGIN
     BLOCK "040904E4"
     BEGIN
-      VALUE "CompanyName", "Allen Institute for Cell Science"
+      VALUE "CompanyName", "Allen Institute"
       VALUE "FileVersion", AICS_VERSION_STRING
       VALUE "ProductName", "AGAVE"
       VALUE "ProductVersion", AICS_VERSION_STRING

agave_pyclient/agave_pyclient/__init__.py

@@ -4,7 +4,7 @@
 
 from .agave import AgaveRenderer  # noqa: F401
 
-__author__ = "Daniel Toloudis, Allen Institute for Cell Science"
+__author__ = "Daniel Toloudis, Allen Institute"
 __email__ = "danielt@alleninstitute.org"
 # Do not edit this string manually, always use bumpversion
 # Details in CONTRIBUTING.md

docs/agave.rst

@@ -744,7 +744,7 @@ Citation
 
 .. |year| date:: %Y
 
-Daniel Toloudis, AGAVE Contributors (|year|). AGAVE: Advanced GPU Accelerated Volume Explorer (Version |release|) [Computer software]. Allen Institute for Cell Science. https://github.com/allen-cell-animated/agave
+Daniel Toloudis, AGAVE Contributors (|year|). AGAVE: Advanced GPU Accelerated Volume Explorer (Version |release|) [Computer software]. Allen Institute, Cell Science. https://github.com/allen-cell-animated/agave
 
 bibtex:
 
@@ -756,7 +756,7 @@ bibtex:
     year         = {|year|},
     version      = {|release|},
     url          = {https://github.com/allen-cell-animated/agave},
-    organization = {Allen Institute for Cell Science},
+    organization = {Allen Institute, Cell Science},
     note         = {Computer Software}
     }
 

docs/conf.py

@@ -18,8 +18,8 @@
 # -- Project information -----------------------------------------------------
 
 project = "AGAVE"
-copyright = "2020, Allen Institute for Cell Science"
-author = "Allen Institute for Cell Science"
+copyright = "2020-26, Allen Institute"
+author = "Allen Institute"
 
 # The full version, including alpha/beta/rc tags
 release = "1.9.0"