brand updates#369
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toloudis
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lynwilhelm
reviewed
May 27, 2026
lynwilhelm
reviewed
May 27, 2026
| "<b>Copyright 2023 The Allen Institute. All rights reserved.</b><br>" | ||
| ""); | ||
| label->setText("AGAVE is made possible through the hard work and dedication of engineers, designers, and scientists " | ||
| "in the cell science accelerator at the Allen " |
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| "in the cell science accelerator at the Allen " | |
| "from the cell science accelerator at Allen " |
lynwilhelm
reviewed
May 27, 2026
| citationtext->setText("Daniel Toloudis, AGAVE Contributors (" + syear + | ||
| "). AGAVE: Advanced GPU Accelerated Volume Explorer (Version " + qApp->applicationVersion() + | ||
| ") [Computer software]. Allen Institute for Cell Science. <a " | ||
| ") [Computer software]. Allen Institute, Cell Science. <a " |
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| ") [Computer software]. Allen Institute, Cell Science. <a " | |
| ") [Computer software]. Allen Institute, Cell Science Accelerator. <a " |
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Can you tell me your source for this one? I could have sworn I saw that you can just do Allen Institute, Cell Science without the word accelerator, in this particular type of usage. This is how others would cite AGAVE usage in their own work.
lynwilhelm
reviewed
May 27, 2026
| agaveUrl + | ||
| "},<br/>" | ||
| " organization = {Allen Institute for Cell Science},<br/>" | ||
| " organization = {Allen Institute, Cell Science},<br/>" |
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| " organization = {Allen Institute, Cell Science},<br/>" | |
| " organization = {Allen Institute, Cell Science Accelerator},<br/>" |
lynwilhelm
reviewed
May 27, 2026
| version = {|release|}, | ||
| url = {https://github.com/allen-cell-animated/agave}, | ||
| organization = {Allen Institute for Cell Science}, | ||
| organization = {Allen Institute, Cell Science}, |
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| organization = {Allen Institute, Cell Science}, | |
| organization = {Allen Institute, Cell Science Accelerator}, |
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Just FYI, here is our Allen Institute general citation guidelines. |
lynwilhelm
requested changes
May 27, 2026
| .. |year| date:: %Y | ||
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| Daniel Toloudis, AGAVE Contributors (|year|). AGAVE: Advanced GPU Accelerated Volume Explorer (Version |release|) [Computer software]. Allen Institute for Cell Science. https://github.com/allen-cell-animated/agave | ||
| Daniel Toloudis, AGAVE Contributors (|year|). AGAVE: Advanced GPU Accelerated Volume Explorer (Version |release|) [Computer software]. Allen Institute, Cell Science. https://github.com/allen-cell-animated/agave |
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| Daniel Toloudis, AGAVE Contributors (|year|). AGAVE: Advanced GPU Accelerated Volume Explorer (Version |release|) [Computer software]. Allen Institute, Cell Science. https://github.com/allen-cell-animated/agave | |
| Daniel Toloudis, AGAVE Contributors (|year|). AGAVE: Advanced GPU Accelerated Volume Explorer (Version |release|) [Computer software]. Allen Institute, Cell Science Accelerator. https://github.com/allen-cell-animated/agave |
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| 3. File-->Open volume... The viewer currently only supports .tif or .czi files containing z-stack data. Currently only 16-bit unsigned pixels are supported. | ||
| The volume data must fit in GPU memory uncompressed, so please try loading no more than a few GB. Files containing time sequences will only load the first time sample. The test data set for the development of this viewer was the data set of the Allen Institute for Cell Science. Images from that data set are found at https://www.allencell.org/3d-cell-viewer.html and https://www.allencell.org/cell-feature-explorer.html where you can load a cell into the 3D viewer in your browser and click the Download button to get the full resolution OME TIFF file. Those images should load correctly into this viewer. | ||
| The volume data must fit in GPU memory uncompressed, so please try loading no more than a few GB. Files containing time sequences will only load the first time sample. The test data set for the development of this viewer was data from Cell Science at the Allen Institute. Images from that data set are found at https://www.allencell.org/3d-cell-viewer.html and https://www.allencell.org/cell-feature-explorer.html where you can load a cell into the 3D viewer in your browser and click the Download button to get the full resolution OME TIFF file. Those images should load correctly into this viewer. |
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| The volume data must fit in GPU memory uncompressed, so please try loading no more than a few GB. Files containing time sequences will only load the first time sample. The test data set for the development of this viewer was data from Cell Science at the Allen Institute. Images from that data set are found at https://www.allencell.org/3d-cell-viewer.html and https://www.allencell.org/cell-feature-explorer.html where you can load a cell into the 3D viewer in your browser and click the Download button to get the full resolution OME TIFF file. Those images should load correctly into this viewer. | |
| The volume data must fit in GPU memory uncompressed, so please try loading no more than a few GB. Files containing time sequences will only load the first time sample. The test data set for the development of this viewer was data from the cell science accelerator at Allen Institute. Images from that data set are found at https://www.allencell.org/3d-cell-viewer.html and https://www.allencell.org/cell-feature-explorer.html where you can load a cell into the 3D viewer in your browser and click the Download button to get the full resolution OME TIFF file. Those images should load correctly into this viewer. |
Contributor
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I think I have the language correct here. They did not explicitly tell us "Allen Institute, Cell Science Accelerator" was legit but the guidance we have gotten so far is limited. The main thing is to not say "Cell Science" alone and to use the word "accelerator" instead if "Institute" in the context of Allen Institute for Cell Science. It feels weird not to capitalize "the cell science accelerator at Allen Institute" and in a meeting we were told we could in sentences if we wanted to. 
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"Allen Institute for Cell Science" is no longer the way we identify. Update all uses of such wording.