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Fix EEG chunks path bug with EEGChunksPath in EEG BIDS import (27 release) #1353

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Merged
cmadjar merged 1 commit into from
Dec 23, 2025
Merged

Fix EEG chunks path bug with EEGChunksPath in EEG BIDS import (27 release) #1353

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15 changes: 8 additions & 7 deletions python/lib/physiological.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1224,11 +1224,13 @@ def create_chunks_for_visualization(self, physio_file_id, data_dir):

chunk_root_dir_config = self.config_db_obj.get_config("EEGChunksPath")
chunk_root_dir = chunk_root_dir_config
if not chunk_root_dir:
# the bids_rel_dir is the first two directories in file_path (
# bids_imports/BIDS_dataset_name_BIDSVersion)
bids_rel_dir = file_path.split('/')[0] + '/' + file_path.split('/')[1]
chunk_root_dir = data_dir + bids_rel_dir + '_chunks' + '/'
file_path_parts = file_path.split('/')
if chunk_root_dir_config:
chunk_root_dir = chunk_root_dir_config
else:
chunk_root_dir = data_dir + file_path_parts[0] + '/'

chunk_root_dir = chunk_root_dir + file_path_parts[1] + '_chunks' + '/'

# determine which script to run based on the file type
file_type = self.grep_file_type_from_file_id(physio_file_id)
Expand Down Expand Up @@ -1258,6 +1260,5 @@ def create_chunks_for_visualization(self, physio_file_id, data_dir):
self.insert_physio_parameter_file(
physiological_file_id = physio_file_id,
parameter_name = 'electrophysiology_chunked_dataset_path',
value = chunk_path.replace(chunk_root_dir_config, '') if chunk_root_dir_config
else chunk_path.replace(data_dir, '')
value = chunk_path.replace(data_dir, '')
)
4 changes: 2 additions & 2 deletions python/react-series-data-viewer/edf_to_chunks.py
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Original file line number Diff line number Diff line change
Expand Up @@ -35,8 +35,8 @@ def load_channels(exclude):
eog=None,
misc=None,
exclude=(),
preload=False,
infer_types=False
infer_types=False,
file_type=mne_edf.FileType.EDF,
)
channel_names = edf_info['ch_names']

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