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Fix EEG chunks path bug with EEGChunksPath in EEG BIDS import #1345

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Merged
MaximeBICMTL merged 1 commit into from
Dec 22, 2025
Merged

Fix EEG chunks path bug with EEGChunksPath in EEG BIDS import #1345

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16 changes: 8 additions & 8 deletions python/lib/physiological.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1223,12 +1223,13 @@ def create_chunks_for_visualization(self, physio_file_id, data_dir):

chunk_root_dir_config = self.config_db_obj.get_config("EEGChunksPath")
chunk_root_dir = chunk_root_dir_config
if not chunk_root_dir:
# the bids_rel_dir is the first two directories in file_path (
# bids_imports/BIDS_dataset_name_BIDSVersion)
file_path_components = Path(file_path).parts
bids_rel_dir = os.path.join(file_path_components[0], file_path_components[1])
chunk_root_dir = os.path.join(data_dir, f'{bids_rel_dir}_chunks')
file_path_parts = Path(file_path).parts
if chunk_root_dir_config:
chunk_root_dir = chunk_root_dir_config
else:
chunk_root_dir = os.path.join(data_dir, file_path_parts[0])

chunk_root_dir = os.path.join(chunk_root_dir, f'{file_path_parts[1]}_chunks')

full_file_path = os.path.join(data_dir, file_path)

Expand Down Expand Up @@ -1260,6 +1261,5 @@ def create_chunks_for_visualization(self, physio_file_id, data_dir):
self.insert_physio_parameter_file(
physiological_file_id = physio_file_id,
parameter_name = 'electrophysiology_chunked_dataset_path',
value = os.path.relpath(chunk_path, chunk_root_dir_config) if chunk_root_dir_config
else os.path.relpath(chunk_path, data_dir)
value = os.path.relpath(chunk_path, data_dir)
)
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