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Update system_requirement.txt
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gongyixiao authored Apr 17, 2017
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4 changes: 2 additions & 2 deletions inputs/system_requirement.txt
Original file line number Diff line number Diff line change
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Software | Version | Included | Other Setting up work
|-------------|---------|-----------|---------------------
--------------|---------|-----------|---------------------
samtools | 1.3 | No | Install and set the path
R | 3.3.0 | No | Install and set the path
java | 1.8 | No | Install and set the path
Expand All @@ -13,7 +13,7 @@ Picard-Tools | 2.9.0 | YES | None
featureCoutns | 1.4.6 | YES | None
sratoolkit | 2.4.2 | YES | None
gdc-client | v1.2.1 | YES | You may need to recompile the source code(from their github) if running into GLIBC incompatibility issue for CentOS 6.8 or lower version.
CPAT | 1.2.2 | YES | You may need to complie from source code following the instruction: http://rna-cpat.sourceforge.net/#installation
CPAT | 1.2.2 | YES | You may need to recompile from source code following the instruction: http://rna-cpat.sourceforge.net/#installation


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