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Update system_requirement.txt
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gongyixiao authored Apr 17, 2017
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16 changes: 8 additions & 8 deletions inputs/system_requirement.txt
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Software | Version | Included | Other Settingup work
Software | Version | Included | Other Setting up work
|-------------|---------|-----------|---------------------
samtools | 1.3 | No |Install and set the path
R | 3.3.0 | No |Install and set the path
java | 1.8 | No |Install and set the path
python | 2.7.3 | No |Install and set the path
perl | v5.10.1 | No |Install and set the path
samtools | 1.3 | No | Install and set the path
R | 3.3.0 | No | Install and set the path
java | 1.8 | No | Install and set the path
python | 2.7.3 | No | Install and set the path
perl | v5.10.1 | No | Install and set the path
STAR | 2.4.2a | YES | None
Cufflinks | 2.2.1 | YES | None
Fastqc | v0.11.3 | YES | None
Picard-Tools | 2.9.0 | YES | None
featureCoutns | 1.4.6 | YES | None
sratoolkit | 2.4.2 | YES | None
gdc-client | v1.2.1 | YES |You may need to recompile the source code(from their github) if running into GLIBC incompatibility issue for CentOS 6.8 or lower version.
CPAT | 1.2.2 | YES |You may need to complie from source code following the instruction: http://rna-cpat.sourceforge.net/#installation
gdc-client | v1.2.1 | YES | You may need to recompile the source code(from their github) if running into GLIBC incompatibility issue for CentOS 6.8 or lower version.
CPAT | 1.2.2 | YES | You may need to complie from source code following the instruction: http://rna-cpat.sourceforge.net/#installation


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