Skip to content

Link gsi diag.* directories instead of moving them #4545

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
DavidHuber-NOAA merged 5 commits into from
Feb 13, 2026
+14 −24
Merged

Link gsi diag.* directories instead of moving them #4545

Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
94a43fe
Create dir.* directories and link instead of moving
DavidHuber-NOAA Feb 9, 2026
e6bdc86
Merge remote-tracking branch 'emc/develop' into feature/gsidiags_dir_ln
DavidHuber-NOAA Feb 10, 2026
865aa51
Remove GSIDIAGDIR before re-populating it; correct dir.XXXX numbering
DavidHuber-NOAA Feb 12, 2026
663dfde
Add one more mkdir
DavidHuber-NOAA Feb 12, 2026
5f8c4a2
Double-quote ntasks
DavidHuber-NOAA Feb 12, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
38 changes: 14 additions & 24 deletions dev/scripts/exglobal_atmos_analysis.sh
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -421,6 +421,8 @@ if [[ "${GENDIAG}" == "YES" ]]; then
fi
# Make the gsidiags directory to house the GSI diagnostic data
GSIDIAGDIR=${GSIDIAGDIR:-"${pCOMOUT_ATMOS_ANALYSIS}/gsidiags"}
rm -rf "${GSIDIAGDIR}"
mkdir -p "${GSIDIAGDIR}"
fi

##############################################################
Expand Down Expand Up @@ -670,6 +672,18 @@ if [[ "${USE_SELECT}" == "YES" ]]; then
fi
fi

# If diags are to be generated, create the gsi.* directories in GSIDIAGDIR and link them here.
# This will allow the GSI to write directly to the GSIDIAGDIR.
if [[ "${GENDIAG}" == "YES" ]]; then
# The number of directories is controlled by the number of tasks
# (one each + 1, though the last will contain no data)
for task in $(seq 0 "${ntasks}"); do
dir="dir.$(printf %04d "${task}")"
mkdir -p "${GSIDIAGDIR}/${dir}"
${NLN} "${GSIDIAGDIR}/${dir}" "./${dir}"
done
fi

##############################################################
# If requested, copy and de-tar guess radstat file
if [[ "${USE_RADSTAT}" == "YES" ]]; then
Expand Down Expand Up @@ -907,30 +921,6 @@ fi

echo "${rCDUMP} ${PDY}${cyc} atminc done at $(date)" > "${COMOUT_ATMOS_ANALYSIS}/${APREFIX}increment.done.txt"

if [[ "${GENDIAG}" == "YES" ]]; then
# Move the gsidiags dir.* directories to pCOMOUT_ATMOS_ANALYSIS for diagnostic jobs
# First, check that the directories exist (we need at least one, so stop after the first match)
count_dirs=$(find . -maxdepth 1 -type d -name 'dir.????' -printf "." -quit | wc -c)
if [[ ${count_dirs:-0} -gt 0 ]]; then
mkdir -p "${GSIDIAGDIR}"
err=$?

if [[ ! -d "${GSIDIAGDIR}" || ${err} -ne 0 ]]; then
err_exit "Failed to create gsidiags directory at ${GSIDIAGDIR}"
fi

for dir in dir.????; do
mv "${dir}" "${GSIDIAGDIR}/"
export err=$?
if [[ ${err} -ne 0 ]]; then
err_exit "Failed to move ${dir} to ${GSIDIAGDIR}/"
fi
done
else
echo "WARNING: No gsidiags dir.* directories found to move."
fi
fi

################################################################################

exit "${err}"
Loading