Move j-jobs and ex-scripts into dev subdirectory

.editorconfig

@@ -22,7 +22,7 @@ indent_style = tab
 indent_size = 4
 max_line_length = 79
 
-[jobs/*]
+[dev/jobs/*]
 indent_style = space
 indent_size = 4
 shell_variant = bash

.github/workflows/bash_code_analysis.yaml

@@ -36,7 +36,7 @@ jobs:
       - name: Install shfmt
         uses: mfinelli/setup-shfmt@v4
       - name: shfmt scan
-        run: shfmt -d dev/jobs jobs scripts
+        run: shfmt -d dev/jobs dev/job_cards dev/scripts
 
   shellcheck:
     runs-on: ubuntu-22.04

dev/ctests/README.md

@@ -251,7 +251,7 @@ source $HOMEgfs/dev/ci/platforms/config.$MACHINE_ID
 - **Complete Documentation**: `docs/source/testing.rst`
 - **Test Case Examples**: `cases/*.yaml`
 - **CI/CD Pipeline**: `../ci/gitlab-ci-hosts.yml`
-- **Job Scripts**: `../../jobs/JGLOBAL_*`
+- **Job Scripts**: `../jobs/JGLOBAL_*`
 - **Platform Configuration**: `../ci/platforms/config.*`
 
 ---

dev/jobs/aeroanlfinal.sh → dev/job_cards/rocoto/aeroanlfinal.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_AERO_ANALYSIS_FINALIZE"
+"${HOMEgfs}/dev/jobs/JGLOBAL_AERO_ANALYSIS_FINALIZE"
 status=$?
 exit "${status}"

dev/jobs/aeroanlgenb.sh → dev/job_cards/rocoto/aeroanlgenb.sh

@@ -16,6 +16,6 @@ export jobid="${job}.$$"
 ###############################################################
 
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGDAS_AERO_ANALYSIS_GENERATE_BMATRIX"
+"${HOMEgfs}/dev/jobs/JGDAS_AERO_ANALYSIS_GENERATE_BMATRIX"
 status=$?
 exit "${status}"

dev/jobs/aeroanlinit.sh → dev/job_cards/rocoto/aeroanlinit.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_AERO_ANALYSIS_INITIALIZE"
+"${HOMEgfs}/dev/jobs/JGLOBAL_AERO_ANALYSIS_INITIALIZE"
 status=$?
 exit "${status}"

dev/jobs/aeroanlvar.sh → dev/job_cards/rocoto/aeroanlvar.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_AERO_ANALYSIS_VARIATIONAL"
+"${HOMEgfs}/dev/jobs/JGLOBAL_AERO_ANALYSIS_VARIATIONAL"
 status=$?
 exit "${status}"

dev/jobs/anal.sh → dev/job_cards/rocoto/anal.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATMOS_ANALYSIS"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATMOS_ANALYSIS"
 status=$?
 
 exit "${status}"

dev/jobs/analcalc.sh → dev/job_cards/rocoto/analcalc.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATMOS_ANALYSIS_CALC"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATMOS_ANALYSIS_CALC"
 status=$?
 
 exit "${status}"

dev/jobs/analcalc_fv3jedi.sh → dev/job_cards/rocoto/analcalc_fv3jedi.sh

@@ -13,6 +13,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}"/jobs/JGLOBAL_ATMOS_ANALYSIS_CALC_FV3JEDI
+"${HOMEgfs}"/dev/jobs/JGLOBAL_ATMOS_ANALYSIS_CALC_FV3JEDI
 status=$?
 exit "${status}"

dev/jobs/analdiag.sh → dev/job_cards/rocoto/analdiag.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATMOS_ANALYSIS_DIAG"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATMOS_ANALYSIS_DIAG"
 status=$?
 
 exit "${status}"

dev/jobs/anlstat.sh → dev/job_cards/rocoto/anlstat.sh

@@ -16,5 +16,5 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ANALYSIS_STATS"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ANALYSIS_STATS"
 exit $?

dev/jobs/arch_tars.sh → dev/job_cards/rocoto/arch_tars.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ARCHIVE_TARS"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ARCHIVE_TARS"
 status=$?
 
 exit "${status}"

dev/jobs/arch_vrfy.sh → dev/job_cards/rocoto/arch_vrfy.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ARCHIVE_VRFY"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ARCHIVE_VRFY"
 status=$?
 
 exit "${status}"

dev/jobs/atmanlfinal.sh → dev/job_cards/rocoto/atmanlfinal.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_FINALIZE"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATM_ANALYSIS_FINALIZE"
 status=$?
 exit "${status}"

dev/jobs/atmanlfv3inc.sh → dev/job_cards/rocoto/atmanlfv3inc.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_FV3_INCREMENT"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATM_ANALYSIS_FV3_INCREMENT"
 status=$?
 exit "${status}"

dev/jobs/atmanlinit.sh → dev/job_cards/rocoto/atmanlinit.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_INITIALIZE"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATM_ANALYSIS_INITIALIZE"
 status=$?
 exit "${status}"

dev/jobs/atmanlvar.sh → dev/job_cards/rocoto/atmanlvar.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATM_ANALYSIS_VARIATIONAL"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATM_ANALYSIS_VARIATIONAL"
 status=$?
 exit "${status}"

dev/jobs/atmensanlfinal.sh → dev/job_cards/rocoto/atmensanlfinal.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_FINALIZE"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATMENS_ANALYSIS_FINALIZE"
 status=$?
 exit "${status}"

dev/jobs/atmensanlfv3inc.sh → dev/job_cards/rocoto/atmensanlfv3inc.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_FV3_INCREMENT"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATMENS_ANALYSIS_FV3_INCREMENT"
 status=$?
 exit "${status}"

dev/jobs/atmensanlinit.sh → dev/job_cards/rocoto/atmensanlinit.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATMENS_ANALYSIS_INITIALIZE"
 status=$?
 exit "${status}"

dev/jobs/atmensanlletkf.sh → dev/job_cards/rocoto/atmensanlletkf.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_LETKF"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATMENS_ANALYSIS_LETKF"
 status=$?
 exit "${status}"

dev/jobs/atmensanlobs.sh → dev/job_cards/rocoto/atmensanlobs.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_OBS"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATMENS_ANALYSIS_OBS"
 status=$?
 exit "${status}"

dev/jobs/atmensanlsol.sh → dev/job_cards/rocoto/atmensanlsol.sh

@@ -15,6 +15,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ATMENS_ANALYSIS_SOL"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ATMENS_ANALYSIS_SOL"
 status=$?
 exit "${status}"

dev/jobs/atmos_ensstat.sh → dev/job_cards/rocoto/atmos_ensstat.sh

@@ -24,7 +24,7 @@ for FORECAST_HOUR in "${fhr_list[@]}"; do
     ###############################################################
     # Execute the JJOB
     ###############################################################
-    "${HOMEgfs}/jobs/JGLOBAL_ATMOS_ENSSTAT"
+    "${HOMEgfs}/dev/jobs/JGLOBAL_ATMOS_ENSSTAT"
     status=$?
     [[ ${status} -ne 0 ]] && exit "${status}"
 done

dev/jobs/atmos_products.sh → dev/job_cards/rocoto/atmos_products.sh

@@ -24,7 +24,7 @@ for FORECAST_HOUR in "${fhr_list[@]}"; do
     ###############################################################
     # Execute the JJOB
     ###############################################################
-    "${HOMEgfs}/jobs/JGLOBAL_ATMOS_PRODUCTS"
+    "${HOMEgfs}/dev/jobs/JGLOBAL_ATMOS_PRODUCTS"
     status=$?
     [[ ${status} -ne 0 ]] && exit "${status}"
 done

dev/jobs/awips.sh → dev/job_cards/rocoto/awips.sh

@@ -19,7 +19,7 @@ for fhr in "${fhr_list[@]}"; do
     ###############################################################
     # Execute the JJOB # TODO
     ###############################################################
-    # "${HOMEgfs}/jobs/J${RUN^^}_ATMOS_AWIPS"
+    # "${HOMEgfs}/dev/jobs/J${RUN^^}_ATMOS_AWIPS"
     err=$?
     if [[ ${err} -ne 0 ]]; then
         exit "${err}"

dev/jobs/awips_20km_1p0deg.sh → dev/job_cards/rocoto/awips_20km_1p0deg.sh

@@ -38,14 +38,14 @@ for fhr3 in ${fhrlst}; do
         if ((fhr % 3 == 0)); then
             export fcsthr="${fhr3}"
             export DATA="${DATAROOT}/${jobid}.${fcsthr}"
-            "${HOMEgfs}/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG"
+            "${HOMEgfs}/dev/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG"
         fi
     # Process every 6 hrs from hour 90 up to hour 240
     elif [[ ${fhr} -ge 90 ]] && [[ ${fhr} -le 240 ]]; then
         if ((fhr % 6 == 0)); then
             export fcsthr="${fhr3}"
             export DATA="${DATAROOT}/${jobid}.${fcsthr}"
-            "${HOMEgfs}/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG"
+            "${HOMEgfs}/dev/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG"
         fi
     fi
 done

dev/jobs/cleanup.sh → dev/job_cards/rocoto/cleanup.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_CLEANUP"
+"${HOMEgfs}/dev/jobs/JGLOBAL_CLEANUP"
 status=$?
 
 exit "${status}"

dev/jobs/earc_tars.sh → dev/job_cards/rocoto/earc_tars.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ENKF_ARCHIVE_TARS"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ENKF_ARCHIVE_TARS"
 status=$?
 
 exit "${status}"

dev/jobs/earc_vrfy.sh → dev/job_cards/rocoto/earc_vrfy.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ENKF_ARCHIVE_VRFY"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ENKF_ARCHIVE_VRFY"
 status=$?
 
 exit "${status}"

dev/jobs/ecen.sh → dev/job_cards/rocoto/ecen.sh

@@ -22,7 +22,7 @@ for fhr in ${fhrlst}; do
     export job=ecen
     export jobid="${job}.$$"
 
-    "${HOMEgfs}/jobs/JGLOBAL_ENKF_ECEN"
+    "${HOMEgfs}/dev/jobs/JGLOBAL_ENKF_ECEN"
     status=$?
     if [[ ${status} -ne 0 ]]; then
         exit "${status}"

dev/jobs/ecen_fv3jedi.sh → dev/job_cards/rocoto/ecen_fv3jedi.sh

@@ -13,6 +13,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}"/jobs/JGLOBAL_ENKF_ECEN_FV3JEDI
+"${HOMEgfs}"/dev/jobs/JGLOBAL_ENKF_ECEN_FV3JEDI
 status=$?
 exit "${status}"

dev/jobs/echgres.sh → dev/job_cards/rocoto/echgres.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGDAS_ATMOS_CHGRES_FORENKF"
+"${HOMEgfs}/dev/jobs/JGDAS_ATMOS_CHGRES_FORENKF"
 status=$?
 
 exit "${status}"

dev/jobs/ediag.sh → dev/job_cards/rocoto/ediag.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ENKF_DIAG"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ENKF_DIAG"
 status=$?
 
 exit "${status}"

dev/jobs/eobs.sh → dev/job_cards/rocoto/eobs.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ENKF_SELECT_OBS"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ENKF_SELECT_OBS"
 status=$?
 
 exit "${status}"

dev/jobs/epos.sh → dev/job_cards/rocoto/epos.sh

@@ -23,7 +23,7 @@ for fhr in ${fhrlst}; do
     export FHMIN_EPOS=${fhr}
     export FHMAX_EPOS=${fhr}
     export FHOUT_EPOS=${fhr}
-    "${HOMEgfs}/jobs/JGDAS_ENKF_POST"
+    "${HOMEgfs}/dev/jobs/JGDAS_ENKF_POST"
     status=$?
     if [[ ${status} -ne 0 ]]; then
         exit "${status}"

dev/jobs/esfc.sh → dev/job_cards/rocoto/esfc.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ENKF_SFC"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ENKF_SFC"
 status=$?
 
 exit "${status}"

dev/jobs/esnowanl.sh → dev/job_cards/rocoto/esnowanl.sh

@@ -13,6 +13,6 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_SNOWENS_ANALYSIS"
+"${HOMEgfs}/dev/jobs/JGLOBAL_SNOWENS_ANALYSIS"
 status=$?
 exit "${status}"

dev/jobs/eupd.sh → dev/job_cards/rocoto/eupd.sh

@@ -15,7 +15,7 @@ export jobid="${job}.$$"
 
 ###############################################################
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_ENKF_UPDATE"
+"${HOMEgfs}/dev/jobs/JGLOBAL_ENKF_UPDATE"
 status=$?
 
 exit "${status}"

dev/jobs/extractvars.sh → dev/job_cards/rocoto/extractvars.sh

@@ -18,7 +18,7 @@ export jobid="${job}.$$"
 echo
 echo "=============== START TO RUN EXTRACTVARS ==============="
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_EXTRACTVARS"
+"${HOMEgfs}/dev/jobs/JGLOBAL_EXTRACTVARS"
 status=$?
 if [[ "${status}" -ne 0 ]]; then
     exit "${status}"

dev/jobs/fbwind.sh → dev/job_cards/rocoto/fbwind.sh

@@ -11,7 +11,7 @@ export job="fbwind"
 export jobid="${job}.$$"
 
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGFS_ATMOS_FBWIND"
+"${HOMEgfs}/dev/jobs/JGFS_ATMOS_FBWIND"
 
 status=$?
 exit "${status}"

dev/jobs/fcst.sh → dev/job_cards/rocoto/fcst.sh

@@ -20,7 +20,7 @@ export job="fcst"
 export jobid="${job}.$$"
 
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_FORECAST"
+"${HOMEgfs}/dev/jobs/JGLOBAL_FORECAST"
 status=$?
 
 exit "${status}"

dev/jobs/fetch.sh → dev/job_cards/rocoto/fetch.sh

@@ -13,7 +13,7 @@ export job="fetch"
 export jobid="${job}.$$"
 
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGLOBAL_FETCH"
+"${HOMEgfs}/dev/jobs/JGLOBAL_FETCH"
 status=$?
 
 exit "${status}"

dev/jobs/fit2obs.sh → dev/job_cards/rocoto/fit2obs.sh

@@ -18,7 +18,7 @@ export jobid="${job}.$$"
 echo
 echo "=============== START TO RUN FIT2OBS ==============="
 # Execute the JJOB
-"${HOMEgfs}/jobs/JGDAS_FIT2OBS"
+"${HOMEgfs}/dev/jobs/JGDAS_FIT2OBS"
 status=$?
 if [[ ${status} -ne 0 ]]; then
     exit "${status}"