Heterogeneous Longitudinal Variational Autoencoder

This repository contains the python scripts used in our paper.

Downloading MNIST digits

• Download and unzip archive from here: https://www.dropbox.com/s/j80vfwcqqu3vmnf/trainingSet.tar?dl=0
• Do not push to remote repository.

Generating Health MNIST experiment data

• To create training/test data, labels as well as mask, run: python Heterogeneous_Health_MNIST_generate.py --source=./trainingSet --destination=./data --num_3=10 --num_6=10 --missing=25 --data_file_name=train.csv --labels_file_name=labels.csv --mask_file_name=mask.csv --data_masked_file_name=masked_data.csv ----datatype_config=D3
• See Heterogeneous_Health_MNIST_generate.py for configuration.

Using our method

-To run the HLVAE model: python HLVAE_main.py --f=./config/hlvae_config_file.txt