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- also fixed counting of motifs in curly brackets in count_unique_subgraphs_of_size_k
- make construct_network >twice as fast - deprecate find_shared_virtuals and adjacencyMatrix_to_network
- refactor construct_network into BFS-search - make compare_glycans/subgraph_isomorphism faster by more cheap checks prior to graph operations
- fix a faulty sequence in df_species - deprecate evaluate_adjacency - make glycan_to_graph faster - deprecate canonicalize_glycan_graph - make graph_to_string_int faster
- fix malformed glycan in binding data - better plot_network formatting - fix reaction hover labels in plot_network
- deprecated neighbor_is_branchpoint - slightly faster graph_to_string
- fewer objects - module-level constants
- speed up construct_network by pulling find_diff into build_network_from_glycans - micro-optimize node attribute management in compare_glycans
- specify wildcards in human_colorectal_O_PMC9254241 - glycan index name also fine now in get_volcano - fix alpha-linkage bug in annotate_figure - make get_differential_biosynthesis also create smarter wildcards + use the Glycan col name expected in get_volcano
- also fix+tweak equivalence p-values in get_differential_expression
…nt_unique_subgraphs_of_size_k
…her than glycan geometric mean
…onosaccharides/modifications
… type column suffixes
- in-lined scale_in_range + process_repeat - micro-optimizations in .draw - improved default plot styling in .analysis functions - propagate random_state from get_roc to multi_feature_scoring - make sure all plots from get_roc get saved
lundstrm
approved these changes
Mar 24, 2026
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