1.3.1#118
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Return the full matrix for sspbc (Posterior probabilities, etc)
…stats; harden AIMS/sspbc outputs; renamed FPKM GEX example file
v1.1.9: feat(app): add example-data loader and AUTO preflight cohort …
…AUTO preflight & ssBC option handling
Branch manos
- Run ssBC with s="TN" and ssBC.v2 with s="TN.v2" when TN cohort detected - Add internal ._msg() helper and replace message() calls accordingly - Fix samples_ERHER2.icd typo and align with AUTO outputs - Improve TN cohort detection and informative logging
- Run ssBC with s="TN" and ssBC.v2 with s="TN.v2" when TN cohort detected - Add internal ._msg() helper and replace message() calls accordingly - Fix samples_ERHER2.icd typo and align with AUTO outputs - Improve TN cohort detection and informative logging -Name unnamed chunks Closes #113
…into BranchManos
Branch manos
fix(mapping): robust ENTREZID coercion in Mapping()
- Use uncentered expression for n=1 fallback (avoid zero-vector Spearman→NA). - Add canonical 4-class name normalizer before RORgroup; create missing cols; enforce order. - Shorten Mapping() completion notification duration in Shiny.
…arnings in Shiny - Warnings now list subgroup + n + sample IDs (truncated for long lists). - Shiny wraps runs in withCallingHandlers() to show warnings via showNotification().
Main to BranchManos unmerged changes
…into BranchManos
…ample) to fix stale cohort display
Branch manos
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1.3.1