Yyu gha #1
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Yyu gha #1
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Co-authored-by: hail <[email protected]>
Co-authored-by: hail <[email protected]>
* Update terra-jupyter-aou to Hail version 0.2.104 * Update conf.json * Update CHANGELOG.md Co-authored-by: hail <[email protected]>
Co-authored-by: hail <[email protected]>
* Change Bioconductor version for Jupyter * Add amm output * pin nextflow version * trying earlier nextflow version * nextflow version before jgit upgrade * Update legacy versions * changing curl --> wget to allow proper nextflow download Co-authored-by: lmcnatt <[email protected]>
Adding Jellyfish, PanGenie, minimap2, whatshap, and RepeatMasker as requested by the AoU Long Reads Working Group Co-authored-by: Marcus D. R. Klarqvist <[email protected]>
Co-authored-by: hail <[email protected]>
Co-authored-by: hail <[email protected]> Co-authored-by: David Mohs <[email protected]>
Adds an image for running RStudio in the AOU workbench. The main difference is installing more packages and adding network rate limiting configurations of `tc`.
…sphere#391) * Updated base dockerfile and appropriate documents. * Updated the key curl command. * Another try at getting gpg key. * changed the curl command. * Another attempt. * Added another key getting command. * Added key add in the same run line as apt-get update. * Add back in wget. * Added to the run line. * Updated curl. * Added all 3 lines back in IDKgit add terra-jupyter-base * Removed wget call. * Anotha one. * Added back in second line of key-getting. For some reason you need to do both... * Removed unnecessary sudo. * Changed cromshell to beta. * Updated python dockerfile. * Fixed location of exceptiongroup install. * Updated auth to v1 * Updated auth to v1 on all actions. * Updated key label for GHA. * Updated terra-jupyter-python tests and requirements.txt. * added println * Fixed tab vs spaces issue. * removed print. * Printing Google project. Trying to debug no permissions. * commented pandas gbq to see if further tests fail. * sklearn => scikit-learn --------- Co-authored-by: Dan King <[email protected]>
* Update terra-jupyter-aou to Hail version 0.2.109 * fix * Update terra-jupyter-hail to Hail version 0.2.109 * image url --------- Co-authored-by: hail <[email protected]>
Co-authored-by: jdcanas <[email protected]>
Co-authored-by: jdcanas <[email protected]>
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