forked from mmistakes/minimal-mistakes
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Showing
1 changed file
with
17 additions
and
1 deletion.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -1,5 +1,21 @@ | ||
--- | ||
layout: "page" | ||
layout: "single" | ||
title: "Resources" | ||
permalink: /resources/ | ||
--- | ||
|
||
Check out some of these links for additional information about GWAS: | ||
|
||
* [An overview of GWAS and linear mixed models](https://www.tau.ac.il/~saharon/ccGWAS.pdf) | ||
* [A tutorial on PCA](https://www.cs.cmu.edu/~elaw/papers/pca.pdf) | ||
* [The 1000 Genomes Project](https://www.internationalgenome.org/data) | ||
* [The sim1000G paper for simulating individuals from a population](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2611-1) and [a tutorial by the authors](https://cran.r-project.org/web/packages/sim1000G/vignettes/SimulatingFamilyData.html) | ||
* [The original KING paper for estimating kinship](https://academic.oup.com/bioinformatics/article/26/22/2867/228512?login=false) | ||
* [The PC-AiR method for finding an ancestry-representative subset](https://pubmed.ncbi.nlm.nih.gov/25810074/) | ||
* [The PC-Relate method for correcting PCA estimates for recent shared genetic ancestry](https://pubmed.ncbi.nlm.nih.gov/26748516/) | ||
* Other modules for conducting GWAS in R using [GENESIS](https://rpubs.com/karlkeat/gwastools): | ||
* [GWAS using GENESIS](https://rpubs.com/karlkeat/gwastools) | ||
* [Population stratification using GENESIS](https://bioconductor.org/packages/devel/bioc/vignettes/GENESIS/inst/doc/pcair.html) | ||
* [WGS computational pipeline](https://uw-gac.github.io/SISG_2020/index.html) | ||
* [The SNPRelate package](https://www.bioconductor.org/packages/devel/bioc/vignettes/SNPRelate/inst/doc/SNPRelate.html) | ||
* [The GWASTools package](https://www.bioconductor.org/packages/devel/bioc/vignettes/GWASTools/inst/doc/Formats.pdf) |