Project Nextflow Microcredential

Nextflow project to be developed for the micro-credential VIB/UGent - Reproducble analysis

In this project you will create a Nextflow pipeline based on some data analysis from your research field or following an example provided by the lecturers.

This project should adhere to the following requirements to succeed:

Requirements Nextflow project

• Should be on Github (Please add the link to projects.md)
• Docker and Apptainer compatibility (bonus points if also conda compatible) of all modules
• Should contain at least 3 modules from tools that weren't covered during the training
  • at least 1 module should contain a custom script
  • at least 1 module should contain an external tool
• Should contain at least 1 config profile
• Should not need any prior setup (the pipeline should work out-of-the-box on the infrastructure used during the training) with minimal test data
• Should output relevant files to an output directory
• Should contain at least 3 different operators

Nice to haves

• Process resources should be managed in the nextflow.config using process labels
• Follow the nf-core best practice guidelines
• The pipeline contains a subworkflow