initial commit

.env.example

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+# secret key for signing and verifying cookies
+SECRET_KEY_BASE=use "rake secret" to generate one
+
+# Postgres configuration
+PG_HOST=localhost
+PG_USERNAME=postgres
+PG_PASSWORD=postgres
+
+# Appsignal push API key
+APPSIGNAL_PUSH_API_KEY=xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

.gitignore

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+*.rbc
+capybara-*.html
+.rspec
+/log
+/tmp
+/db/*.sqlite3
+/db/*.sqlite3-journal
+/public/system
+/coverage/
+/spec/tmp
+**.orig
+rerun.txt
+pickle-email-*.html
+
+# YARD
+/.yardoc
+/doc
+
+# dotenv
+.env
+
+## Environment normalization:
+/.bundle
+/vendor/bundle
+
+# these should all be checked in to normalize the environment:
+# Gemfile.lock, .ruby-version, .ruby-gemset
+
+# unless supporting rvm < 1.11.0 or doing something fancy, ignore this:
+.rvmrc
+
+# Ignore Byebug command history file.
+.byebug_history

Gemfile

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+source 'https://rubygems.org'
+
+# Frameworks
+gem 'rails', '4.2.6'
+
+# DB
+gem 'pg', '~> 0.18.4'
+
+# Frontend
+gem 'sass-rails', '~> 5.0'
+gem 'uglifier', '>= 1.3.0'
+gem 'coffee-rails', '~> 4.1.0'
+gem 'jquery-rails'
+gem 'turbolinks'
+
+# Configuration
+gem 'dotenv-rails', '~> 2.1.1'
+
+# Logging'n'tracking
+gem 'appsignal', '~> 1.1.9'
+
+group :development do
+  # Docs
+  gem 'yard', '~> 0.8.7.6'
+  gem 'redcarpet', '~> 3.3.4'
+
+  # Deployment
+  gem 'capistrano-rails'
+  gem 'capistrano', '~> 3.4', require: false
+  gem 'capistrano-bundler', '~> 1.1', require: false
+  gem 'capistrano-rvm',   '~> 0.1', require: false
+  gem 'capistrano-passenger', '~> 0.2.0', require: false
+end
+
+# Debugging
+gem 'web-console', '~> 2.0', group: :development
+gem 'byebug', group: [:development, :test]

Gemfile.lock

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+GEM
+  remote: https://rubygems.org/
+  specs:
+    actionmailer (4.2.6)
+      actionpack (= 4.2.6)
+      actionview (= 4.2.6)
+      activejob (= 4.2.6)
+      mail (~> 2.5, >= 2.5.4)
+      rails-dom-testing (~> 1.0, >= 1.0.5)
+    actionpack (4.2.6)
+      actionview (= 4.2.6)
+      activesupport (= 4.2.6)
+      rack (~> 1.6)
+      rack-test (~> 0.6.2)
+      rails-dom-testing (~> 1.0, >= 1.0.5)
+      rails-html-sanitizer (~> 1.0, >= 1.0.2)
+    actionview (4.2.6)
+      activesupport (= 4.2.6)
+      builder (~> 3.1)
+      erubis (~> 2.7.0)
+      rails-dom-testing (~> 1.0, >= 1.0.5)
+      rails-html-sanitizer (~> 1.0, >= 1.0.2)
+    activejob (4.2.6)
+      activesupport (= 4.2.6)
+      globalid (>= 0.3.0)
+    activemodel (4.2.6)
+      activesupport (= 4.2.6)
+      builder (~> 3.1)
+    activerecord (4.2.6)
+      activemodel (= 4.2.6)
+      activesupport (= 4.2.6)
+      arel (~> 6.0)
+    activesupport (4.2.6)
+      i18n (~> 0.7)
+      json (~> 1.7, >= 1.7.7)
+      minitest (~> 5.1)
+      thread_safe (~> 0.3, >= 0.3.4)
+      tzinfo (~> 1.1)
+    airbrussh (1.0.2)
+      sshkit (>= 1.6.1, != 1.7.0)
+    appsignal (1.1.9)
+      rack
+      thread_safe
+    arel (6.0.3)
+    binding_of_caller (0.7.2)
+      debug_inspector (>= 0.0.1)
+    builder (3.2.2)
+    byebug (9.0.5)
+    capistrano (3.5.0)
+      airbrussh (>= 1.0.0)
+      capistrano-harrow
+      i18n
+      rake (>= 10.0.0)
+      sshkit (>= 1.9.0)
+    capistrano-bundler (1.1.4)
+      capistrano (~> 3.1)
+      sshkit (~> 1.2)
+    capistrano-harrow (0.5.2)
+    capistrano-passenger (0.2.0)
+      capistrano (~> 3.0)
+    capistrano-rails (1.1.7)
+      capistrano (~> 3.1)
+      capistrano-bundler (~> 1.1)
+    capistrano-rvm (0.1.2)
+      capistrano (~> 3.0)
+      sshkit (~> 1.2)
+    coffee-rails (4.1.1)
+      coffee-script (>= 2.2.0)
+      railties (>= 4.0.0, < 5.1.x)
+    coffee-script (2.4.1)
+      coffee-script-source
+      execjs
+    coffee-script-source (1.10.0)
+    concurrent-ruby (1.0.2)
+    debug_inspector (0.0.2)
+    dotenv (2.1.1)
+    dotenv-rails (2.1.1)
+      dotenv (= 2.1.1)
+      railties (>= 4.0, < 5.1)
+    erubis (2.7.0)
+    execjs (2.7.0)
+    globalid (0.3.6)
+      activesupport (>= 4.1.0)
+    i18n (0.7.0)
+    jquery-rails (4.1.1)
+      rails-dom-testing (>= 1, < 3)
+      railties (>= 4.2.0)
+      thor (>= 0.14, < 2.0)
+    json (1.8.3)
+    loofah (2.0.3)
+      nokogiri (>= 1.5.9)
+    mail (2.6.4)
+      mime-types (>= 1.16, < 4)
+    mime-types (3.1)
+      mime-types-data (~> 3.2015)
+    mime-types-data (3.2016.0521)
+    mini_portile2 (2.1.0)
+    minitest (5.9.0)
+    net-scp (1.2.1)
+      net-ssh (>= 2.6.5)
+    net-ssh (3.2.0)
+    nokogiri (1.6.8)
+      mini_portile2 (~> 2.1.0)
+      pkg-config (~> 1.1.7)
+    pg (0.18.4)
+    pkg-config (1.1.7)
+    rack (1.6.4)
+    rack-test (0.6.3)
+      rack (>= 1.0)
+    rails (4.2.6)
+      actionmailer (= 4.2.6)
+      actionpack (= 4.2.6)
+      actionview (= 4.2.6)
+      activejob (= 4.2.6)
+      activemodel (= 4.2.6)
+      activerecord (= 4.2.6)
+      activesupport (= 4.2.6)
+      bundler (>= 1.3.0, < 2.0)
+      railties (= 4.2.6)
+      sprockets-rails
+    rails-deprecated_sanitizer (1.0.3)
+      activesupport (>= 4.2.0.alpha)
+    rails-dom-testing (1.0.7)
+      activesupport (>= 4.2.0.beta, < 5.0)
+      nokogiri (~> 1.6.0)
+      rails-deprecated_sanitizer (>= 1.0.1)
+    rails-html-sanitizer (1.0.3)
+      loofah (~> 2.0)
+    railties (4.2.6)
+      actionpack (= 4.2.6)
+      activesupport (= 4.2.6)
+      rake (>= 0.8.7)
+      thor (>= 0.18.1, < 2.0)
+    rake (11.2.2)
+    redcarpet (3.3.4)
+    sass (3.4.22)
+    sass-rails (5.0.4)
+      railties (>= 4.0.0, < 5.0)
+      sass (~> 3.1)
+      sprockets (>= 2.8, < 4.0)
+      sprockets-rails (>= 2.0, < 4.0)
+      tilt (>= 1.1, < 3)
+    sprockets (3.6.2)
+      concurrent-ruby (~> 1.0)
+      rack (> 1, < 3)
+    sprockets-rails (3.0.4)
+      actionpack (>= 4.0)
+      activesupport (>= 4.0)
+      sprockets (>= 3.0.0)
+    sshkit (1.11.1)
+      net-scp (>= 1.1.2)
+      net-ssh (>= 2.8.0)
+    thor (0.19.1)
+    thread_safe (0.3.5)
+    tilt (2.0.5)
+    turbolinks (2.5.3)
+      coffee-rails
+    tzinfo (1.2.2)
+      thread_safe (~> 0.1)
+    uglifier (3.0.0)
+      execjs (>= 0.3.0, < 3)
+    web-console (2.3.0)
+      activemodel (>= 4.0)
+      binding_of_caller (>= 0.7.2)
+      railties (>= 4.0)
+      sprockets-rails (>= 2.0, < 4.0)
+    yard (0.8.7.6)
+
+PLATFORMS
+  ruby
+
+DEPENDENCIES
+  appsignal (~> 1.1.9)
+  byebug
+  capistrano (~> 3.4)
+  capistrano-bundler (~> 1.1)
+  capistrano-passenger (~> 0.2.0)
+  capistrano-rails
+  capistrano-rvm (~> 0.1)
+  coffee-rails (~> 4.1.0)
+  dotenv-rails (~> 2.1.1)
+  jquery-rails
+  pg (~> 0.18.4)
+  rails (= 4.2.6)
+  redcarpet (~> 3.3.4)
+  sass-rails (~> 5.0)
+  turbolinks
+  uglifier (>= 1.3.0)
+  web-console (~> 2.0)
+  yard (~> 0.8.7.6)
+
+BUNDLED WITH
+   1.11.2

README.md

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+# GRASP - GReat Apes Survival Partnership Database
+
+This repository contains the source code of the GRASP database.
+
+## Installation
+
+GRASP is a Rails 4 app, using a Postgres database. Installation is pretty standard:
+
+```
+  $ git clone https://github.com/unepwcmc/grasp
+  $ cd grasp
+  $ bundle install
+  $ bundle exec rake db:create db:migrate
+  …
+
+  $ bundle exec rails server
+  …
+```
+
+Visit `http://localhost:3000` and you should be good to go! 🎉
+
+# License
+
+This repository lives under the [MIT license.](LICENSE)

Rakefile

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+# Add your own tasks in files placed in lib/tasks ending in .rake,
+# for example lib/tasks/capistrano.rake, and they will automatically be available to Rake.
+
+require File.expand_path('../config/application', __FILE__)
+
+Rails.application.load_tasks

app/assets/javascripts/application.js

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+// This is a manifest file that'll be compiled into application.js, which will include all the files
+// listed below.
+//
+// Any JavaScript/Coffee file within this directory, lib/assets/javascripts, vendor/assets/javascripts,
+// or any plugin's vendor/assets/javascripts directory can be referenced here using a relative path.
+//
+// It's not advisable to add code directly here, but if you do, it'll appear at the bottom of the
+// compiled file.
+//
+// Read Sprockets README (https://github.com/rails/sprockets#sprockets-directives) for details
+// about supported directives.
+//
+//= require jquery
+//= require jquery_ujs
+//= require turbolinks
+//= require_tree .

app/assets/stylesheets/application.css

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+/*
+ * This is a manifest file that'll be compiled into application.css, which will include all the files
+ * listed below.
+ *
+ * Any CSS and SCSS file within this directory, lib/assets/stylesheets, vendor/assets/stylesheets,
+ * or any plugin's vendor/assets/stylesheets directory can be referenced here using a relative path.
+ *
+ * You're free to add application-wide styles to this file and they'll appear at the bottom of the
+ * compiled file so the styles you add here take precedence over styles defined in any styles
+ * defined in the other CSS/SCSS files in this directory. It is generally better to create a new
+ * file per style scope.
+ *
+ *= require_tree .
+ *= require_self
+ */

app/controllers/application_controller.rb

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+class ApplicationController < ActionController::Base
+  # Prevent CSRF attacks by raising an exception.
+  # For APIs, you may want to use :null_session instead.
+  protect_from_forgery with: :exception
+end

app/helpers/application_helper.rb

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+module ApplicationHelper
+end

app/views/layouts/application.html.erb

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+<!DOCTYPE html>
+<html>
+<head>
+  <title>Grasp</title>
+  <%= stylesheet_link_tag    'application', media: 'all', 'data-turbolinks-track' => true %>
+  <%= javascript_include_tag 'application', 'data-turbolinks-track' => true %>
+  <%= csrf_meta_tags %>
+</head>
+<body>
+
+<%= yield %>
+
+</body>
+</html>

bin/bundle

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+#!/usr/bin/env ruby
+ENV['BUNDLE_GEMFILE'] ||= File.expand_path('../../Gemfile', __FILE__)
+load Gem.bin_path('bundler', 'bundle')

bin/rails

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+#!/usr/bin/env ruby
+begin
+  load File.expand_path('../spring', __FILE__)
+rescue LoadError => e
+  raise unless e.message.include?('spring')
+end
+APP_PATH = File.expand_path('../../config/application', __FILE__)
+require_relative '../config/boot'
+require 'rails/commands'

bin/rake

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+#!/usr/bin/env ruby
+begin
+  load File.expand_path('../spring', __FILE__)
+rescue LoadError => e
+  raise unless e.message.include?('spring')
+end
+require_relative '../config/boot'
+require 'rake'
+Rake.application.run