Enable customizable idealized, doubly-periodic tests

.gitmodules

@@ -1,7 +1,7 @@
 [submodule "FV3"]
   path = FV3
-  url = https://github.com/NOAA-EMC/fv3atm
-  branch = develop
+  url = https://github.com/LarissaReames-NOAA/fv3atm
+  branch = ideal-periodic
 [submodule "WW3"]
   path = WW3
   url = https://github.com/NOAA-EMC/WW3

tests/fv3_conf/ideal_run.IN

@@ -0,0 +1,48 @@
+rm -rf INPUT RESTART
+mkdir  INPUT RESTART
+
+rsync -arv @[INPUTDATA_ROOT]/FV3_regional/INPUT/. INPUT/.
+
+cp @[INPUTDATA_ROOT]/FV3_fix/CCN_ACTIVATE.BIN .
+
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m01.nc aeroclim.m01.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m02.nc aeroclim.m02.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m03.nc aeroclim.m03.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m04.nc aeroclim.m04.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m05.nc aeroclim.m05.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m06.nc aeroclim.m06.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m07.nc aeroclim.m07.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m08.nc aeroclim.m08.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m09.nc aeroclim.m09.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m10.nc aeroclim.m10.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m12.nc aeroclim.m11.nc
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/MERRA2/merra2.aerclim.2003-2014.m12.nc aeroclim.m12.nc
+
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_BC.v1_3.dat  optics_BC.dat
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_DU.v15_3.dat optics_DU.dat
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_OC.v1_3.dat  optics_OC.dat
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_SS.v3_3.dat  optics_SS.dat
+cp @[INPUTDATA_ROOT]/FV3_input_data_INCCN_aeroclim/aer_data/LUTS/optics_SU.v1_3.dat  optics_SU.dat
+
+cp ${PATHRT}/parm/ideal_supercell.snd.IN input_sounding 
+
+if [ $WARM_START = .true. ]; then
+    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.coupler.res             INPUT/coupler.res
+    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.fv_core.res.nc          INPUT/fv_core.res.nc
+    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.fv_core.res.tile1.nc    INPUT/fv_core.res.tile1.nc
+    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.fv_srf_wnd.res.tile1.nc INPUT/fv_srf_wnd.res.tile1.nc
+    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.fv_tracer.res.tile1.nc  INPUT/fv_tracer.res.tile1.nc
+    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.phy_data.nc             INPUT/phy_data.nc
+    cp ../${DEP_RUN}${RT_SUFFIX}/RESTART/20220824.030000.sfc_data.nc             INPUT/sfc_data.nc
+fi
+if [ $WRITE_RESTART_WITH_BCS = .true. ]; then
+    cp @[INPUTDATA_ROOT]/FV3_regional/RESTART/fv_core.res.tile1_new.nc                           RESTART/fv_core.res.tile1_new.nc
+    cp @[INPUTDATA_ROOT]/FV3_regional/RESTART/fv_tracer.res.tile1_new.nc                         RESTART/fv_tracer.res.tile1_new.nc
+fi
+
+if [[ $POSTAPP = 'lam' ]]; then
+    cp ${PATHRT}/parm/post_itag_fv3lam itag
+    cp ${PATHRT}/parm/postxconfig-NT-fv3lam.txt postxconfig-NT.txt
+    cp ${PATHRT}/parm/postxconfig-NT-fv3lam.txt postxconfig-NT_FH00.txt
+    cp ${PATHRT}/parm/params_grib2_tbl_new params_grib2_tbl_new
+fi

tests/parm/ideal_supercell.nml.IN

@@ -0,0 +1,283 @@
+&atmos_model_nml
+    avg_max_length = 3600.0
+    blocksize = 32
+    ccpp_suite = 'FV3_ideal_mp_nssl'
+    chksum_debug = .false.
+    dycore_only = .false.
+/
+
+&cires_ugwp_nml
+    knob_ugwp_azdir = 2, 4, 4, 4
+    knob_ugwp_doaxyz = 1
+    knob_ugwp_doheat = 1
+    knob_ugwp_dokdis = 1
+    knob_ugwp_effac = 1, 1, 1, 1
+    knob_ugwp_ndx4lh = 1
+    knob_ugwp_solver = 2
+    knob_ugwp_source = 1, 1, 0, 0
+    knob_ugwp_stoch = 0, 0, 0, 0
+    knob_ugwp_version = 0
+    knob_ugwp_wvspec = 1, 25, 25, 25
+    launch_level = 25
+/
+
+&diag_manager_nml
+    prepend_date = .false.
+/
+
+&external_ic_nml
+    checker_tr = .false.
+    filtered_terrain = .true.
+    gfs_dwinds = .true.
+    levp = 65
+    nt_checker = 0
+/
+
+&fms_nml
+    clock_grain = 'ROUTINE'
+    domains_stack_size = 3000000
+    print_memory_usage = .false.
+/
+
+&fms2_io_nml
+  netcdf_default_format = "netcdf4"
+/
+
+&fv_core_nml
+    a_imp = 1.0
+    adjust_dry_mass = .false.
+    bc_update_interval = 3
+    beta = 0.0
+    consv_am = .false.
+    consv_te = 0.0
+    d2_bg = 0.0
+    d2_bg_k1 = 0.2
+    d2_bg_k2 = 0.04
+    d4_bg = 0.12
+    d_con = 1.0
+    d_ext = 0.0
+    dddmp = 0.1
+    deglat = 35.
+    deglon = -95.
+    delt_max = 0.008
+    dnats = 0
+    do_sat_adj = .false.
+    do_schmidt = .true.
+    do_vort_damp = .true.
+    dwind_2d = .false.
+    dx_const = 3000.
+    dy_const = 3000.
+    dz_min = 2
+    external_eta = .false.
+    external_ic = .false.
+    fill = .true.
+    full_zs_filter = .false.
+    fv_debug = .false.
+    fv_sg_adj = 300
+    gfs_phil = .false.
+    grid_type = 4
+    hord_dp = 6
+    hord_mt = 6
+    hord_tm = 6
+    hord_tr = 10
+    hord_vt = 6
+    hydrostatic = .false.
+    io_layout = 1, 1
+    k_split = 3
+    ke_bg = 0.0
+    kord_mt = 9
+    kord_tm = -9
+    kord_tr = 9
+    kord_wz = 9
+    layout = @[INPES],@[JNPES]
+    make_nh = .true.
+    mountain = .false.
+    n_split = 2
+    n_sponge = 9
+    n_zs_filter = 0
+    na_init = 1
+    ncep_ic = .false.
+    nggps_ic = .true.
+    no_dycore = .false.
+    nord = 3
+    npx = 99
+    npy = 99
+    npz = 60
+    npz_type = 'meso'
+    nrows_blend = 0
+    ntiles = 1
+    nudge_qv = .false.
+    nwat = 7
+    p_fac = 0.1
+    phys_hydrostatic = .false.
+    print_freq = 6
+    psm_bc = 1
+    range_warn = .true.
+    read_increment = .false.
+    regional = .false.
+    regional_bcs_from_gsi = .false.
+    res_latlon_dynamics = 'fv3_increment.nc'
+    reset_eta = .false.
+    rf_cutoff = 2000.0
+    stretch_fac = 0.999
+    target_lat = 38.0
+    target_lon = -120.0
+    tau = 5.0
+    use_hydro_pressure = .false.
+    vtdm4 = 0.02
+    warm_start = .false.
+    write_restart_with_bcs = .false.
+    z_tracer = .true.
+/
+
+&fv_grid_nml
+    grid_file = 'INPUT/grid_spec.nc'
+/
+
+&gfs_physics_nml
+    bl_mynn_edmf = 0
+    bl_mynn_edmf_mom = 0
+    bl_mynn_tkeadvect = .false.
+    cal_pre = .false.
+    cdmbgwd = 3.5, 0.25
+    cnvcld = .false.
+    cnvgwd = .false.
+    cplflx = .false.
+    debug = .false.
+    do_deep = .false.
+    do_mynnedmf = .false.
+    do_mynnsfclay = .false.
+    do_shum = .false.
+    do_skeb = .false.
+    do_spp  = .false.
+    do_sppt = .false.
+    dspheat = .true.
+    effr_in = .true.
+    fhcyc = 0.0
+    fhlwr = 1200.0
+    fhswr = 1200.0
+    fhzero = 1.0
+    h2o_phys = .false.
+    hybedmf = .false.
+    iaer = 111
+    ialb = 1
+    iau_delthrs = 6
+    iau_inc_files = ''
+    iaufhrs = 30
+    icloud_bl = 1
+    ico2 = 2
+    iems = 1
+    imfdeepcnv = 0
+    imfshalcnv = 0
+    imp_physics = 17
+    iopt_alb = 2
+    iopt_btr = 1
+    iopt_crs = 1
+    iopt_dveg = 2
+    iopt_frz = 1
+    iopt_inf = 1
+    iopt_rad = 1
+    iopt_run = 1
+    iopt_sfc = 1
+    iopt_snf = 4
+    iopt_stc = 1
+    iopt_tbot = 2
+    isol = 2
+    isot = 1
+    isubc_lw = 2
+    isubc_sw = 2
+    ivegsrc = 1
+    ldiag3d = .false.
+    lheatstrg = .false.
+    lndp_type = 0
+    lradar = .true.
+    lsm = 1
+    lsoil = 4
+    lsoil_lsm = 4
+    ltaerosol = .false.
+    lwhtr = .true.
+    n_var_lndp = 0
+    n_var_spp = 0
+    nsfullradar_diag = 3600
+    nssl_cccn    = 0.6e9
+    nssl_ccn_on  = .true.
+    nssl_hail_on = .true.
+    nst_anl = .true.
+    nstf_name = 2, 1, 1, 0, 5
+    oz_phys = .false.
+    oz_phys_2015 = .false.
+    pdfcld = .false.
+    pre_rad = .false.
+    print_diff_pgr = .true.
+    prslrd0 = 5000.0
+    random_clds = .false.
+    redrag = .true.
+    satmedmf = .false.
+    shal_cnv = .false.
+    swhtr = .true.
+    trans_trac = .false.
+    ttendlim = -999
+    use_ufo = .true.
+/
+
+&interpolator_nml
+    interp_method = 'conserve_great_circle'
+/
+
+&namsfc
+    fabsl = 99999
+    faisl = 99999
+    faiss = 99999
+    fnabsc = 'C3337.maximum_snow_albedo.tileX.nc'
+    fnacna = ''
+    fnaisc = 'CFSR.SEAICE.1982.2012.monthly.clim.grb'
+    fnalbc = 'C3337.snowfree_albedo.tileX.nc'
+    fnalbc2 = 'C3337.facsf.tileX.nc'
+    fnglac = 'global_glacier.2x2.grb'
+    fnmskh = 'seaice_newland.grb'
+    fnmxic = 'global_maxice.2x2.grb'
+    fnslpc = 'C3337.slope_type.tileX.nc'
+    fnsmcc = 'global_soilmgldas.t126.384.190.grb'
+    fnsnoa = ''
+    fnsnoc = 'global_snoclim.1.875.grb'
+    fnsotc = 'C3337.soil_type.tileX.nc'
+    fntg3c = 'C3337.substrate_temperature.tileX.nc'
+    fntsfa = ''
+    fntsfc = 'RTGSST.1982.2012.monthly.clim.grb'
+    fnvegc = 'C3337.vegetation_greenness.tileX.nc'
+    fnvetc = 'C3337.vegetation_type.tileX.nc'
+    fnvmnc = 'C3337.vegetation_greenness.tileX.nc'
+    fnvmxc = 'C3337.vegetation_greenness.tileX.nc'
+    fnzorc = 'igbp'
+    fsicl = 99999
+    fsics = 99999
+    fslpl = 99999
+    fsmcl = 99999, 99999, 99999
+    fsnol = 99999
+    fsnos = 99999
+    fsotl = 99999
+    ftsfl = 99999
+    ftsfs = 90
+    fvetl = 99999
+    fvmnl = 99999
+    fvmxl = 99999
+    ldebug = .true.
+/
+
+&test_case_nml
+      test_case = 60
+      bubble_type = 3
+      n_bub = 1
+      jcenters = 50
+      icenters = 50
+      t_profile = -1
+      q_profile = -1
+      ws_profile = -1
+      bubble_t = 3.
+      bubble_q = 0.
+      bubble_rad_x = 5000.
+      bubble_rad_y = 5000.
+      bubble_zc = 1500.
+      us0 = 12.
+
+/