MIDRC-1292 Enable Nextflow tests in Kind CI + test_pv_posix_ops

[paulineribeyre]

Link to JIRA ticket if there is one: https://ctds-planx.atlassian.net/browse/MIDRC-1292

Fixed in uc-cdis/gen3-workflow#169

New Features

Breaking Changes

Bug Fixes

Improvements

Dependency updates

Deployment changes

[github-actions]

The style in this PR agrees with black. ✔️

This formatting comment was generated automatically by a script in uc-cdis/wool.

[github-actions]

Integration Tests

Failed to Prepare CI environment

Please find the Github Action logs here

[github-actions]

Integration Tests

Test summary after running integration tests

filepath	passed	failed	SUBTOTAL
tests/test_gen3_workflow.py	2	1	3
TOTAL	2	1	3

Test summary after rerunning failed integration tests

filepath	passed	SUBTOTAL
tests/test_gen3_workflow.py	1	1
TOTAL	1	1

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

[github-actions]

Integration Tests on Kind

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	22	5	2	29
TOTAL	22	5	2	29

Test summary after rerunning failed integration tests

filepath	passed	SUBTOTAL
tests/test_gen3_workflow.py	5	5
TOTAL	5	5

[github-actions]

Integration Tests

filepath	passed	SUBTOTAL
tests/test_gen3_workflow.py	3	3
TOTAL	3	3

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

Integration Tests on Kind

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	1	1	1	3
TOTAL	1	1	1	3

Test summary after rerunning failed integration tests

filepath	failed	SUBTOTAL
tests/test_gen3_workflow.py	1	1
TOTAL	1	1

[github-actions]

Integration Tests

filepath	passed	SUBTOTAL
tests/test_gen3_workflow.py	3	3
TOTAL	3	3

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

Integration Tests on Kind

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	1	1	1	3
TOTAL	1	1	1	3

Test summary after rerunning failed integration tests

filepath	failed	SUBTOTAL
tests/test_gen3_workflow.py	1	1
TOTAL	1	1

[github-actions]

Integration Tests on Kind

filepath	passed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	28	2	30
TOTAL	28	2	30

[github-actions]

Integration Tests

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	29	0	1	30
tests/test_oauth2.py	15	0	0	15
tests/test_dicom_viewer.py	4	0	0	4
tests/test_centralized_auth.py	16	0	0	16
tests/test_graph_submit_and_query.py	10	3	1	14
tests/test_audit_service.py	3	0	3	6
tests/test_presigned_url.py	7	0	0	7
tests/test_requestor.py	6	0	0	6
tests/test_drs_endpoint.py	6	0	0	6
tests/test_data_upload.py	8	0	1	9
tests/test_dbgap.py	4	0	1	5
tests/test_user_token.py	5	0	0	5
tests/test_study_viewer.py	3	0	0	3
tests/test_user_data_library.py	2	0	2	4
tests/test_user_login_activation.py	2	0	1	3
tests/test_pfb_export.py	1	0	0	1
tests/test_login_page.py	2	0	0	2
tests/test_guppy_service.py	13	0	0	13
tests/test_discoverypage.py	1	0	0	1
tests/test_register_user.py	2	0	0	2
tests/test_client_credentials.py	1	0	0	1
tests/test_aggregate_mds.py	1	0	0	1
tests/test_gen3_sdk.py	1	0	0	1
tests/test_google_data_access.py	1	0	0	1
tests/test_gen3client.py	1	0	0	1
tests/test_manifest_service.py	1	0	0	1
tests/test_homepage.py	1	0	0	1
tests/test_oidc_client.py	2	0	0	2
tests/test_fence_admin.py	2	0	0	2
tests/test_ras_authn.py	0	0	3	3
tests/test_ras_passport.py	0	0	3	3
tests/test_gen3ff_landing_page.py	0	0	2	2
tests/test_env_sanity.py	0	0	1	1
tests/test_etl.py	0	0	1	1
tests/test_workspace.py	0	1	0	1
TOTAL	150	4	20	174

Test summary after rerunning failed integration tests

filepath	passed	failed	SUBTOTAL
tests/test_graph_submit_and_query.py	2	1	3
tests/test_workspace.py	1	0	1
TOTAL	3	1	4

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

[github-actions]

Integration Tests on Kind

filepath	passed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	28	2	30
TOTAL	28	2	30

[github-actions]

Integration Tests

Test summary after running integration tests

filepath	passed	failed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	27	2	1	30
TOTAL	27	2	1	30

Test summary after rerunning failed integration tests

filepath	passed	failed	SUBTOTAL
tests/test_gen3_workflow.py	1	1	2
TOTAL	1	1	2

Please find the detailed integration test report here

Please find the detailed integration test report after rerunning failed tests here

Please find the Github Action logs here

[github-actions]

Integration Tests

filepath	passed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	29	1	30
TOTAL	29	1	30

Please find the detailed integration test report here

Please find the Github Action logs here

[github-actions]

Integration Tests on Kind

filepath	passed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	28	2	30
TOTAL	28	2	30

[github-actions]

Integration Tests on Kind

filepath	passed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	28	2	30
TOTAL	28	2	30

[github-actions]

Integration Tests

filepath	passed	skipped	SUBTOTAL
tests/test_gen3_workflow.py	29	1	30
TOTAL	29	1	30

Please find the detailed integration test report here

Please find the Github Action logs here