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Add LDFALGS CPPFLAGS and unshadow CFLAGS #1

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6 changes: 3 additions & 3 deletions Makefile
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Original file line number Diff line number Diff line change
@@ -1,10 +1,10 @@
CC=gcc
CFLAGS=-g -Wall -O2 -Wno-unused-function
CC ?= gcc
CFLAGS+=-g -Wall -O2 -Wno-unused-function

all:seqtk-trinity

seqtk-trinity:seqtk.c khash.h kseq.h
$(CC) $(CFLAGS) seqtk.c -o $@ -lz -lm
$(CC) $(LDFLAGS) $(CFLAGS) $(CPPFLAGS) seqtk.c -o $@ -lz -lm

clean:
rm -fr gmon.out *.o ext/*.o a.out seqtk trimadap *~ *.a *.dSYM session*
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