Amesos2 : matrix-gather when colMap does not match rowMap #13790

iyamazaki · 2025-02-05T21:43:29Z

@trilinos/amesos2

Motivation

It adds a logic to handle the GIDs in colMap, that are not in rowMap.

Related Issues

Amesos2: KLU2 re-indexing operation causes throw from Map ctor in MueLu solve #13774

Additional Information

…matrix Signed-off-by: iyamazaki <[email protected]>

cgcgcg · 2025-02-05T22:20:47Z

How come MueLu is throwing a rectangular matrix in a direct solver?

trilinos-autotester · 2025-02-05T22:34:10Z

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Pull Request Author: iyamazaki

iyamazaki · 2025-02-05T22:57:15Z

@MalachiTimothyPhillips can respond better (he said it is due to the presence of periodic boundary conditions), but col-map of the input matrix has GIDs that are not in row-map..

This is causing the issue when the new code path is constructing the contiguous map. I can try removing these extra columns, but for now, I just fall back to the original code.

trilinos-autotester · 2025-02-05T23:23:53Z

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CDash Test Results for PR# 13790.

trilinos-autotester · 2025-02-05T23:24:10Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
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trilinos-autotester · 2025-02-05T23:24:16Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

Signed-off-by: iyamazaki <[email protected]>

cgcgcg · 2025-02-05T23:39:14Z

I don't understand what Amesos2 would do with a rectangular matrix. Also, is this tested somewhere?

trilinos-autotester · 2025-02-05T23:44:50Z

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Pull Request Author: iyamazaki

iyamazaki · 2025-02-06T00:13:23Z

I don't think this is tested (the previous PR passed all the tests). I am currently trying to run a few more tests, but will also try adding a test that makes sense..

MalachiTimothyPhillips · 2025-02-06T00:41:03Z

@iyamazaki @cgcgcg

We have a use-case with a square matrix whose row map/col map are not identical as a consequence of some periodic boundary condition handling.

I'll do some digging, but I think this is a case where the maps are compatible but not identical.

@iyamazaki One thought occurs to me: maybe we could simplify this PR by doing:

gather_supported &= this->matrixA_->getRowMap()->isSameAs(*this->matrixA_->getColMap());

trilinos-autotester · 2025-02-06T00:47:51Z

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CDash Test Results for PR# 13790.

trilinos-autotester · 2025-02-06T00:48:08Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
WARNING: NO REVIEWERS HAVE BEEN REQUESTED FOR THIS PULL REQUEST!

trilinos-autotester · 2025-02-06T00:48:15Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

Signed-off-by: iyamazaki <[email protected]>

trilinos-autotester · 2025-02-06T18:41:06Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2025-02-06T18:46:23Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

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Using Repos:

Repo: TRILINOS (iyamazaki/Trilinos)

Pull Request Author: iyamazaki

Signed-off-by: iyamazaki <[email protected]>

trilinos-autotester · 2025-02-06T18:48:15Z

Status Flag 'Pull Request AutoTester' - Error: Jenkins Jobs - A user has pushed a change to the PR before testing completed. NEW EVENT 'committed', ID C_kwDOAsJyMdoAKGZiOGVhNDk2NzNlYWYyM2MyMWM5NmM4NzA2ZDc5Mzc3ZDgxZjk4MDU... The Jenkins Jobs will be shutdown; Testing of this PR must occur again.

iyamazaki · 2025-02-06T18:49:10Z

@MalachiTimothyPhillips. Sorry, you are right. The matrix do not have non-zeroes in these extra columns, so the actual matrix is actually square.

The current code filters out these extra columns, so it should work even if the colMap does not match the rowMap.

trilinos-autotester · 2025-02-06T18:49:27Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

Note: Testing will normally be attempted again in approx. 2 Hrs 30 Mins. If a change to the PR source branch occurs, the testing will be attempted again on next available autotester run.

Pull Request Auto Testing has FAILED (click to expand)

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CDash Test Results for PR# 13790.

Wiki: How to Reproduce PR Testing Builds and Errors.

trilinos-autotester · 2025-02-06T18:58:39Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2025-02-06T18:58:42Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2025-02-06T19:04:00Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

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Using Repos:

Repo: TRILINOS (iyamazaki/Trilinos)

Pull Request Author: iyamazaki

trilinos-autotester · 2025-02-06T19:55:02Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

Test Name: PR_gcc-openmpi-openmp

Build Num: 1090
Status: PASSED

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Build Num: 1138
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CDash Test Results for PR# 13790.

trilinos-autotester · 2025-02-06T19:55:21Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
WARNING: NO REVIEWERS HAVE BEEN REQUESTED FOR THIS PULL REQUEST!

trilinos-autotester · 2025-02-06T19:55:27Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

iyamazaki · 2025-02-06T20:05:59Z

@ndellingwood

trilinos-autotester · 2025-02-06T20:24:40Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
NO REVIEWS HAVE BEEN PERFORMED ON THIS PULL REQUEST!

trilinos-autotester · 2025-02-06T20:24:47Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

packages/amesos2/src/Amesos2_TpetraCrsMatrix_MatrixAdapter_def.hpp

trilinos-autotester · 2025-02-07T02:04:48Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
THE LAST COMMIT TO THIS PULL REQUEST HAS BEEN REVIEWED, BUT NOT ACCEPTED OR REQUIRES CHANGES!

trilinos-autotester · 2025-02-07T02:04:54Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

trilinos-autotester · 2025-02-07T15:45:08Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ ndellingwood ]!

trilinos-autotester · 2025-02-07T15:45:15Z

Status Flag 'Pull Request AutoTester' - AutoMerge IS ENABLED, but the Label AT: AUTOMERGE is not set. Either set Label AT: AUTOMERGE or manually merge the PR...

iyamazaki · 2025-02-07T15:48:19Z

Thank you, @ndellingwood !!

Amesos2 : fall back to original matrix-gather in case of rectangular …

9a75bdd

…matrix Signed-off-by: iyamazaki <[email protected]>

iyamazaki requested a review from a team as a code owner February 5, 2025 21:43

iyamazaki added the pkg: Amesos2 label Feb 5, 2025

Amesos2 : reindex initialize to catch un-matched col GIDs

e595265

Signed-off-by: iyamazaki <[email protected]>

iyamazaki changed the title ~~Amesos2 : fall back to original matrix-gather in case of rectangular …~~ Amesos2 : matrix-gather with colMap is not rowMap Feb 6, 2025

Amesos2 : filter out "extra columns" during reindex & gather

0f7ef94

Signed-off-by: iyamazaki <[email protected]>

Amesos2 : update comment

fb8ea49

Signed-off-by: iyamazaki <[email protected]>

iyamazaki added the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Feb 6, 2025

iyamazaki changed the title ~~Amesos2 : matrix-gather with colMap is not rowMap~~ Amesos2 : matrix-gather when colMap does not match rowMap Feb 6, 2025

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Feb 6, 2025

iyamazaki requested a review from ndellingwood February 6, 2025 20:05

ndellingwood reviewed Feb 7, 2025

View reviewed changes

packages/amesos2/src/Amesos2_TpetraCrsMatrix_MatrixAdapter_def.hpp Show resolved Hide resolved

packages/amesos2/src/Amesos2_TpetraCrsMatrix_MatrixAdapter_def.hpp Show resolved Hide resolved

iyamazaki requested a review from ndellingwood February 7, 2025 05:16

ndellingwood approved these changes Feb 7, 2025

View reviewed changes

iyamazaki merged commit b8f0a3a into trilinos:develop Feb 7, 2025
17 checks passed

Amesos2 : matrix-gather when colMap does not match rowMap #13790

Amesos2 : matrix-gather when colMap does not match rowMap #13790

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iyamazaki commented Feb 5, 2025 • edited Loading

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cgcgcg commented Feb 5, 2025

trilinos-autotester commented Feb 5, 2025

trilinos-autotester commented Feb 5, 2025

Build Information

Test Name: PR_gcc-openmpi-openmp

Jenkins Parameters

Build Information

Test Name: PR_gcc

Jenkins Parameters

Build Information

Test Name: PR_gcc-openmpi_debug

Jenkins Parameters

Build Information

Test Name: PR_clang

Jenkins Parameters

Build Information

Test Name: PR_cuda

Jenkins Parameters

Build Information

Test Name: PR_intel

Jenkins Parameters

Build Information

Test Name: PR_cuda-uvm

Jenkins Parameters

Using Repos:

iyamazaki commented Feb 5, 2025

trilinos-autotester commented Feb 5, 2025

Build Information

Test Name: PR_gcc-openmpi-openmp

Jenkins Parameters

Build Information

Test Name: PR_gcc

Jenkins Parameters

Build Information

Test Name: PR_gcc-openmpi_debug

Jenkins Parameters

Build Information

Test Name: PR_clang

Jenkins Parameters

Build Information

Test Name: PR_cuda

Jenkins Parameters

Build Information

Test Name: PR_intel

Jenkins Parameters

Build Information

Test Name: PR_cuda-uvm

Jenkins Parameters

trilinos-autotester commented Feb 5, 2025

trilinos-autotester commented Feb 5, 2025

cgcgcg commented Feb 5, 2025

trilinos-autotester commented Feb 5, 2025

trilinos-autotester commented Feb 5, 2025

Build Information

Test Name: PR_gcc-openmpi-openmp

Jenkins Parameters

Build Information

Test Name: PR_gcc

Jenkins Parameters

Build Information

Test Name: PR_gcc-openmpi_debug

Jenkins Parameters

Build Information

Test Name: PR_clang

Jenkins Parameters

Build Information

Test Name: PR_cuda

Jenkins Parameters

Build Information

Test Name: PR_intel

Jenkins Parameters

Build Information

Test Name: PR_cuda-uvm

iyamazaki commented Feb 5, 2025 •

edited

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