Fixes to SEACAS-Snapshot-01-2025 #13782

gsjaardema · 2025-02-04T19:57:24Z

@trilinos/seacas

Motivation

Related Issues

Closes Seacas: undefined reference to nc_inq_dimids when building Trilinos #13769

Stakeholder Feedback

Testing

gsjaardema · 2025-02-04T20:17:16Z

This is the portion of the patch / PR that is causing @spdomin problem:

         Ioss::SerializeIO serializeIO_(this);
-        m_timestepCount = ex_inquire_int(get_file_pointer(), EX_INQ_TIME);
-      }
-	// Need to sync timestep count across ranks if parallel...
-	if (isParallel) {
-	  auto min_timestep_count = util().global_minmax(m_timestepCount, Ioss::ParallelUtils::DO_MIN);
-	  if (min_timestep_count == 0) {
-	    auto max_timestep_count = util().global_minmax(m_timestepCount, Ioss::ParallelUtils::DO_MAX);
-	    if (max_timestep_count != 0) {
-	      if (myProcessor == 0) {
-		// NOTE: Don't want to warn on all processors if the
-		// timestep count is zero on some, but not all ranks.
-		fmt::print(Ioss::WarnOut(),
-			   "At least one database has no timesteps.  No times will be read on ANY"
-			   " database for consistency.\n");
-	      }
-	    }
-	  }
-	  m_timestepCount = min_timestep_count;
-	}
-	
-        if (m_timestepCount <= 0) {
-          return;
+        timestepCount       = ex_inquire_int(get_file_pointer(), EX_INQ_TIME);
+        int exTimestepCount = timestepCount;
+        // Need to sync timestep count across ranks if parallel...
+        if (isParallel) {
+          auto min_timestep_count =
+              util().global_minmax(timestepCount, Ioss::ParallelUtils::DO_MIN);
+          if (min_timestep_count == 0) {
+            auto max_timestep_count =
+                util().global_minmax(timestepCount, Ioss::ParallelUtils::DO_MAX);
+            if (max_timestep_count != 0) {
+              if (myProcessor == 0) {
+                // NOTE: Don't want to warn on all processors if the
+                // timestep count is zero on some, but not all ranks.
+                fmt::print(Ioss::WarnOut(),
+                           "At least one database has no timesteps.  No times will be read on ANY"
+                           " database for consistency.\n");
+              }
+            }
+          }
+          timestepCount = min_timestep_count;
+        }
+
+        if (timestepCount <= 0) {
+          return tsteps;

In the pre-patched code, the serialize_io is terminated right after calling the timestep count inquiry; in the new code, we stay in the serialize_io block and then do the mpi calls which does not work.

Should have a fix soon.

trilinos-autotester · 2025-02-04T20:29:50Z

Status Flag 'Pull Request AutoTester' - User Requested Retest - Label AT: RETEST will be reset after testing.

trilinos-autotester · 2025-02-04T20:29:53Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

Signed-off-by: Greg Sjaardema <[email protected]>

trilinos-autotester · 2025-02-04T20:35:23Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

Pull Request Auto Testing STARTING (click to expand)

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Using Repos:

Repo: TRILINOS (gsjaardema/Trilinos)

Pull Request Author: gsjaardema

gsjaardema · 2025-02-04T20:42:24Z

@spdomin Last commit (1632040) should fix #13773

trilinos-autotester · 2025-02-04T21:05:09Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: 1 or more Jobs FAILED

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CDash Test Results for PR# 13782.

Wiki: How to Reproduce PR Testing Builds and Errors.

trilinos-autotester · 2025-02-04T21:32:01Z

Status Flag 'Pre-Test Inspection' - Auto Inspected - Inspection is Not Necessary for this Pull Request.

trilinos-autotester · 2025-02-04T21:37:01Z

Status Flag 'Pull Request AutoTester' - Testing Jenkins Projects:

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Test Name: PR_cuda-uvm

Build Num: 1126
Status: STARTED

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Using Repos:

Repo: TRILINOS (gsjaardema/Trilinos)

Pull Request Author: gsjaardema

trilinos-autotester · 2025-02-04T22:07:47Z

Status Flag 'Pull Request AutoTester' - Jenkins Testing: all Jobs PASSED

Pull Request Auto Testing has PASSED (click to expand)

Build Information

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CDash Test Results for PR# 13782.

trilinos-autotester · 2025-02-04T22:08:04Z

Status Flag 'Pre-Merge Inspection' - - This Pull Request Requires Inspection... The code must be inspected by a member of the Team before Testing/Merging
NO REVIEWS HAVE BEEN PERFORMED ON THIS PULL REQUEST!

trilinos-autotester · 2025-02-04T22:08:10Z

All Jobs Finished; status = PASSED, However Inspection must be performed before merge can occur...

ikalash

I just verified that my build issue is resolved. Thanks for fixing it so quickly!

gsjaardema · 2025-02-05T00:03:54Z

@ikalash @alanw0 @tokusanya If one of you have a chance, could you look at this PR and do a quick review. Thanks.

@spdomin I think this fixes your issue also

trilinos-autotester · 2025-02-05T00:04:03Z

Status Flag 'Pre-Merge Inspection' - SUCCESS: The last commit to this Pull Request has been INSPECTED AND APPROVED by [ ikalash ]!

trilinos-autotester · 2025-02-05T00:04:10Z

Status Flag 'Pull Request AutoTester' - Pull Request will be Automerged

trilinos-autotester · 2025-02-05T00:04:23Z

Merge on Pull Request# 13782: IS A SUCCESS - Pull Request successfully merged

gsjaardema self-assigned this Feb 4, 2025

gsjaardema requested a review from a team as a code owner February 4, 2025 19:57

gsjaardema added 2 commits February 4, 2025 13:31

EXODUS: Fix so works with non-netcdf4-enabled netCDF

a9972b6

Signed-off-by: Greg Sjaardema <[email protected]>

IOSS: Fix calling mpi function while in serialize_io mode

1632040

Signed-off-by: Greg Sjaardema <[email protected]>

gsjaardema force-pushed the SEACAS-Snapshot-fix1 branch from b848a63 to 1632040 Compare February 4, 2025 20:31

gsjaardema requested review from ikalash, alanw0 and tokusanya February 4, 2025 20:43

trilinos-autotester removed the AT: RETEST Causes the PR autotester to run a new round of PR tests on the next iteration label Feb 4, 2025

ikalash approved these changes Feb 4, 2025

View reviewed changes

trilinos-autotester merged commit d1b229a into trilinos:develop Feb 5, 2025
17 checks passed

trilinos-autotester removed the AT: AUTOMERGE Causes the PR autotester to automatically merge the PR branch once approvals are completed label Feb 5, 2025

gsjaardema deleted the SEACAS-Snapshot-fix1 branch February 5, 2025 00:24

gsjaardema mentioned this pull request Feb 5, 2025

Seacas: undefined reference to nc_inq_dimids when building Trilinos #13769

Closed

Fixes to SEACAS-Snapshot-01-2025 #13782

Fixes to SEACAS-Snapshot-01-2025 #13782

Conversation

gsjaardema commented Feb 4, 2025

Motivation

Related Issues

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Testing

gsjaardema commented Feb 4, 2025

trilinos-autotester commented Feb 4, 2025

trilinos-autotester commented Feb 4, 2025

trilinos-autotester commented Feb 4, 2025

Build Information

Test Name: PR_gcc-openmpi-openmp

Jenkins Parameters

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Test Name: PR_cuda

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Test Name: PR_intel

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Test Name: PR_cuda-uvm

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Using Repos:

gsjaardema commented Feb 4, 2025 • edited Loading

trilinos-autotester commented Feb 4, 2025

Build Information

Test Name: PR_gcc-openmpi-openmp

Jenkins Parameters

Build Information

Test Name: PR_gcc

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trilinos-autotester commented Feb 4, 2025

trilinos-autotester commented Feb 4, 2025

Build Information

Test Name: PR_gcc-openmpi-openmp

Jenkins Parameters

Build Information

Test Name: PR_gcc

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Test Name: PR_gcc-openmpi_debug

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Test Name: PR_cuda

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Build Information

Test Name: PR_intel

Jenkins Parameters

Build Information

Test Name: PR_cuda-uvm

Jenkins Parameters

gsjaardema commented Feb 4, 2025 •

edited

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