Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

An opinionated Cromwell orchestration manager.

A bioinformatics workflow engine built on top of the Workflow Description Language (WDL).

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources

[Experimental] Workflow Definition Language (WDL) to CWL

Rust crates for working with Workflow Description Language (WDL) documents.

Create WDL documentation using Markdown.

A command-line tool for executing, managing, and querying WDL workflows on Cromwell servers.

WDL pipelines for the Sentieon tools

Broad fungal method repository

WDL tasks for commonly used BFX tools

Run Sprocket WDL document validation as part of a CI/CD pipeline with GitHub Actions.

Pipeline to characterize Human Endogenous Retrovirus (HERV) expression

Workflow for metagenome assembly

Visual Studio Code extension for Sprocket (https://github.com/stjude-rust-labs/sprocket).

A pipeline for mitochondrial mutation calling

A cloud-based pipeline to estimate telomere lengths from WGS data using Telseq

WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @OOAAHH(SunHao) .

A workflow for processing metagenomics data sets using Centrifuge. Category:Single-Sample