Metagenomic binning based on Hi-C data
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
MGKit: Metagenomics Framework
A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.
MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards
A metagenome assembly and evaluation pipeline, focused on hi-fi long reads, but with support for lo-fi long reads and hybrid assemblies
🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean
Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.
KOMB is a tool for fast identification of unitigs of interest in metagenomes. KOMB introduces the concept of a Hybrid Unitig Graph (an extension to compacted de Bruijn graphs) and relies on k-core and K-truss decomposition algorithms.
🐴 CLinically Okay Metagenomic Pipeline 🐴
A few scripts to help with the installation of MetaErg, the contig/bin annotation pipeline
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
quantify-virome: identify and quantify viruses from metagenomic shotgun sequences
MetaBolt: Lightning fast & automated metagenomic pipeline powered by Nextflow
A flexible metagenomic pipeline combining read-based, assemblies and MAGs with downstream analysis
The following codes are focused on microbiome analysis, alpha, beta and relative abundance differences.
Metagenomic analysis of the project: "PROGRAMAÇÃO METABÓLICA INDUZIDA PELA SUPERLACTAÇÃO E SEUS EFEITOS NA ATIVAÇÃO DO INFLAMASSOMA NLRP3 E EXPRESSÃO DO MIR-155 EM MODELO EXPERIMENTAL DE RESISTÊNCIA À INSULINA"
MAPle provides three different modules for the analysis of paired-end short read metagenomic data
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