Predicting regulatory DNA elements based on epigenomic signatures
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Jun 26, 2024 - Python
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enhancer-prediction
Here are 9 public repositories matching this topic...
Evaluation framework for computationally inferred gene networks from single-cell data.
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Sep 11, 2025 - Jupyter Notebook
Identify transcription factor-enhancer/promoter-gene network from run-on sequencing data
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Aug 27, 2022 - R
Integrated workflow to predict super-enhancers and compute feature importance
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Mar 14, 2018 - Python
An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.
transcription-factors rna-seq data-visualization epigenetics chip-seq histone atac-seq r-package enhancer transcription-factor-binding ucsc-browser regulatory-network epigenomics multi-omics enhancer-prediction chromatin-accessibiity regulome-analysis
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Nov 18, 2023 - HTML
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Jan 28, 2019 - Jupyter Notebook
machine-learning computational-biology r-package enhancer-prediction xgboost-classifier enhancer-gene
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Aug 22, 2025 - R
ONCOgenic Regulatory Element discovery
transcription-factors snakemake computational-biology bioinformatics-pipeline cancer-genomics chip-seq cancer-research precision-medicine motif-analysis oncology epigenomics enhancer-prediction regulatory-genomics conservation-analysis
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Aug 5, 2025 - Python
Differential peak analysis, genomic sequences associated with distinct experimental conditions
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Nov 9, 2024 - Jupyter Notebook
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