epydemix, the ABC of epidemics
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May 9, 2025 - Jupyter Notebook
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computational-epidemiology
Here are 19 public repositories matching this topic...
The companion repository to Computational Modeling of Infectious Disease by Chris von Csefalvay
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Dec 15, 2022 - Jupyter Notebook
EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.
social-network network-science metapopulation graph-theory temporal-networks applied-mathematics agent-based-modeling dynamical-systems differential-equations stochastic-processes mathematical-physics agent-based-simulation behavioral-modelling contact-networks computational-epidemiology digital-epidemiology mathematical-epidemiology mobility-networks network-epidemiology epidemic-modelling
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Dec 25, 2022 - Jupyter Notebook
CE-ABC is a code to simulate the epidemic outbreaks with mechanistic models through a cross-entropy approximate Bayesian framework.
computational-biology epidemiology bayesian-inference approximate-bayesian-computation mechanistic-models compartmental-models cross-entropy-method epidemic-simulations computational-epidemiology
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Apr 4, 2025 - MATLAB
Estimates of COVID-19 R_t in Real-Time.
python jupyter-notebook open-access open-science epidemiology covid-19 covid-19-italy covid19-data reproduction-number computational-epidemiology
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May 7, 2020 - Jupyter Notebook
A tool to estimate Instantaneous Reproduction Number
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Dec 16, 2021 - HTML
Code for the paper: The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout
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Aug 26, 2021 - Jupyter Notebook
Special repository containing the profile directory of JuliaEpi.
data-science statistics forecasting epidemiology bayesian-inference uncertainty-quantification infectious-diseases nowcasting scenario-analysis infectious-disease-models computational-epidemiology
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Nov 8, 2022
epidWaves is a Matlab/Python package to fit multi-wave statistical models to the complex epidemic data.
statistical-analysis epidemiology epidemics mathematical-biology data-driven-model computational-epidemiology
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Apr 4, 2025 - MATLAB
Special repository hosting the InPhyT website.
computer-science machine-learning data-mining physics modeling mathematics computational-neuroscience scientific-computing data-analysis network-analysis mathematical-modelling statistical-physics computational-social-science statistical-modeling computational-modelling scientific-machine-learning computational-epidemiology computational-socialscience
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Dec 9, 2023 - HTML
An Analysis of Lassa Fever Outbreaks in Nigeria using Machine Learning Models and Shapley Values
machine-learning xgboost nigeria random-forest-classifier lassa-fever computational-epidemiology shapley-additive-explanations
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Jun 6, 2023 - Jupyter Notebook
Code, text, figures, etc. for reproducing my dissertation proposal, "Impact of Host and Vaccine Characteristics on Immune Responses following Influenza Vaccination".
epidemiology immunology influenza university-of-georgia computational-epidemiology vaccinology influenza-vaccine dissertation-proposal
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Sep 11, 2024 - TeX
Python implementation of behavioral-epidemic models for COVID-19
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May 16, 2025 - Jupyter Notebook
An Agent-Based Model used to Simulate Rodent Control Strategies for the Control of Periodic Outbreaks of Lassa Fever in Nigeria
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May 1, 2023 - Python
Code for the paper: Modeling the interplay between disease spread, behaviors, and disease perception with a data-driven approach
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Jun 24, 2024 - Jupyter Notebook
Code and data associated with Billings et al., "High dose inactivated influenza vaccine inconsistently improves heterologous antibody responses in an elderly human cohort", in preparation.
biostatistics epidemiology brms influenza vaccines causal-inference bayesian-statistics computational-epidemiology immunogenicity-prediction influenza-vaccine immune-response heterologous-immunity antibody-response
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Nov 21, 2024 - TeX
O índice de contágio do COVID-19 regionalizado, por estados, municípios e até bairros, em tempo real, pode apoiar a tomada de decisões do poder público sobre como conter o contágio e como conduzir a retomada da atividade econômica de forma segura.
python data-science jupyter-notebook epidemiology volunteer covid-19 covid covid-19-brazil reproduction-number computational-epidemiology
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Sep 30, 2022 - Jupyter Notebook
A Real-Time, Data-Driven Infectious Disease Dashboard and Surveillance Application to Monitor the 2022-2023 Global Mpox Outbreak
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May 9, 2023 - Python
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