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Merge pull request #4 from tidyomics/improve_vignettes #12

Merge pull request #4 from tidyomics/improve_vignettes

Merge pull request #4 from tidyomics/improve_vignettes #12

Triggered via push May 9, 2025 20:29
Status Failure
Total duration 33m 42s
Artifacts

rworkflows.yml

on: push
docker-build-and-push
33m 39s
docker-build-and-push
Matrix: rworkflows
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22 errors and 21 warnings
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to report stat collector result
ubuntu-latest (auto)
Error: connect ECONNREFUSED 127.0.0.1:7777
ubuntu-latest (auto)
[Workflow Telemetry] Error
ubuntu-latest (auto)
[Workflow Telemetry] Unable to finish stat collector
ubuntu-latest (auto)
Process completed with exit code 1.
macOS-latest (auto)
Process completed with exit code 1.
macOS-latest (auto)
Build process failed
macOS-latest (auto)
Vignette re-building failed.
macOS-latest (auto)
processing vignette 'Session_3_imaging_assays.Rmd' failed with diagnostics:
macOS-latest (auto)
processing vignette 'Session_2_Tidy_spatial_analyses.Rmd' failed with diagnostics:
macOS-latest (auto)
processing vignette 'Session_1_sequencing_assays.Rmd' failed with diagnostics:
macOS-latest (auto)
--- re-building ‘Introduction.Rmd’ using rmarkdown
windows-latest (auto)
Process completed with exit code 1.
windows-latest (auto)
Build process failed
windows-latest (auto)
Vignette re-building failed.
windows-latest (auto)
processing vignette 'Session_3_imaging_assays.Rmd' failed with diagnostics:
windows-latest (auto)
processing vignette 'Session_2_Tidy_spatial_analyses.Rmd' failed with diagnostics:
windows-latest (auto)
processing vignette 'Session_1_sequencing_assays.Rmd' failed with diagnostics:
windows-latest (auto)
--- re-building 'Introduction.Rmd' using rmarkdown
docker-build-and-push
buildx failed with: ERROR: failed to solve: process "/bin/sh -c Rscript -e \"options(repos = c(CRAN = 'https://cran.r-project.org')); devtools::install('.', dependencies=TRUE, build_vignettes=TRUE, repos = BiocManager::repositories())\"" did not complete successfully: exit code: 1
ubuntu-latest (auto)
No files were found with the provided path: check. No artifacts will be uploaded.
macOS-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (auto)
dependencies ‘h5mread’, ‘BiocVersion’ are not available
macOS-latest (auto)
dependencies ‘BiocVersion’, ‘BiocStyle’ are not available
macOS-latest (auto)
fribidi 1.0.16 is already installed and up-to-date. To reinstall 1.0.16, run: brew reinstall fribidi
macOS-latest (auto)
harfbuzz 11.2.0 is already installed and up-to-date. To reinstall 11.2.0, run: brew reinstall harfbuzz
macOS-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/data/experiment/bin/macosx/big-sur-arm64/contrib/4.4:
macOS-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/bioc/bin/macosx/big-sur-arm64/contrib/4.4:
windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/windows/contrib/4.4:
windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.4:
windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/data/experiment/bin/windows/contrib/4.4:
windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/bioc/bin/windows/contrib/4.4:
windows-latest (auto)
dependencies 'h5mread', 'BiocVersion' are not available
windows-latest (auto)
dependencies 'BiocVersion', 'BiocStyle' are not available
windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/books/bin/windows/contrib/4.4:
windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/workflows/bin/windows/contrib/4.4:
windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/data/experiment/bin/windows/contrib/4.4:
windows-latest (auto)
unable to access index for repository https://www.bioconductor.org/packages/3.21/bioc/bin/windows/contrib/4.4: